StartDate: 2021-03-19 11:02:12+00:00 CpuId: 32x Intel Xeon W 2000 / Scalable Bronze 3000 / Silver 4000 / Gold 5000 / 6000 / Platinum 8000 (Skylake), 14nm CommitSHA: 27588553a701cf8a68abf65255643b9878d22bbe CommitTime: 2021-03-19 08:39:05 +0100 CommitAuthor: Ole Schütt CommitSubject: grid: Add optimized branches for lp <= 2 to GPU kernels Trying to pull image cp2k-toolchain-mpich... success :-) Trying to pull image cp2k-manual... image not found. #################### Building Image cp2k-manual #################### Dockerfile: /tools/docker/Dockerfile.test_manual Build-Args: TOOLCHAIN=gcr.io/cp2k-org-project/img_cp2k-toolchain-mpich-arch-f73:gittree-7272e9e-buildargs-68b329d Sending build context to Docker daemon 73.22kB Step 1/9 : ARG TOOLCHAIN=cp2k/toolchain:latest Step 2/9 : FROM ${TOOLCHAIN} ---> fce4a6260999 Step 3/9 : WORKDIR /workspace ---> Running in c4583549769a Removing intermediate container c4583549769a ---> 4c0de717c8a9 Step 4/9 : COPY ./scripts/install_basics.sh . ---> 627442124dcb Step 5/9 : RUN ./install_basics.sh ---> Running in 590cc3f66172 Installing Ubuntu packages... debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpopt0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14718 files and directories currently installed.) Preparing to unpack .../libpopt0_1.16-14_amd64.deb ... Unpacking libpopt0:amd64 (1.16-14) ... Selecting previously unselected package rsync. Preparing to unpack .../rsync_3.1.3-8_amd64.deb ... Unpacking rsync (3.1.3-8) ... Preparing to unpack .../git_1%3a2.25.1-1ubuntu3.1_amd64.deb ... Unpacking git (1:2.25.1-1ubuntu3.1) over (1:2.25.1-1ubuntu3) ... Setting up git (1:2.25.1-1ubuntu3.1) ... Setting up libpopt0:amd64 (1.16-14) ... Setting up rsync (3.1.3-8) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Processing triggers for libc-bin (2.31-0ubuntu9.2) ... done. Cloning cp2k repository... done. Removing intermediate container 590cc3f66172 ---> 5a3c2421d85f Step 6/9 : COPY ./scripts/install_manual.sh . ---> 601cb9291e56 Step 7/9 : RUN ./install_manual.sh ---> Running in 73a982ae0365 debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14754 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../01-libdbus-1-3_1.12.16-2ubuntu2.1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.16-2ubuntu2.1) ... Selecting previously unselected package ucf. Preparing to unpack .../02-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../03-libpng16-16_1.6.37-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../04-libxau6_1%3a1.0.9-0ubuntu1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-0ubuntu1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../05-libxdmcp6_1%3a1.1.3-0ubuntu1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.3-0ubuntu1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../06-libxcb1_1.14-2_amd64.deb ... Unpacking libxcb1:amd64 (1.14-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../07-libx11-data_2%3a1.6.9-2ubuntu1.1_all.deb ... Unpacking libx11-data (2:1.6.9-2ubuntu1.1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../08-libx11-6_2%3a1.6.9-2ubuntu1.1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.9-2ubuntu1.1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../09-libxext6_2%3a1.3.4-0ubuntu1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-0ubuntu1) ... Selecting previously unselected package java-common. Preparing to unpack .../10-java-common_0.72_all.deb ... Unpacking java-common (0.72) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../11-libavahi-common-data_0.7-4ubuntu7_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.7-4ubuntu7) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../12-libavahi-common3_0.7-4ubuntu7_amd64.deb ... Unpacking libavahi-common3:amd64 (0.7-4ubuntu7) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../13-libavahi-client3_0.7-4ubuntu7_amd64.deb ... Unpacking libavahi-client3:amd64 (0.7-4ubuntu7) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../14-libcups2_2.3.1-9ubuntu1.1_amd64.deb ... Unpacking libcups2:amd64 (2.3.1-9ubuntu1.1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../15-liblcms2-2_2.9-4_amd64.deb ... Unpacking liblcms2-2:amd64 (2.9-4) ... Selecting previously unselected package libjpeg-turbo8:amd64. Preparing to unpack .../16-libjpeg-turbo8_2.0.3-0ubuntu1.20.04.1_amd64.deb ... Unpacking libjpeg-turbo8:amd64 (2.0.3-0ubuntu1.20.04.1) ... Selecting previously unselected package libjpeg8:amd64. Preparing to unpack .../17-libjpeg8_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../18-libfreetype6_2.10.1-2ubuntu0.1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.1-2ubuntu0.1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../19-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../20-fontconfig-config_2.13.1-2ubuntu3_all.deb ... Unpacking fontconfig-config (2.13.1-2ubuntu3) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../21-libfontconfig1_2.13.1-2ubuntu3_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-2ubuntu3) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../22-libnspr4_2%3a4.25-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.25-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../23-libnss3_2%3a3.49.1-1ubuntu1.5_amd64.deb ... Unpacking libnss3:amd64 (2:3.49.1-1ubuntu1.5) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../24-libasound2-data_1.2.2-2.1ubuntu2.3_all.deb ... Unpacking libasound2-data (1.2.2-2.1ubuntu2.3) ... Selecting previously unselected package libasound2:amd64. Preparing to unpack .../25-libasound2_1.2.2-2.1ubuntu2.3_amd64.deb ... Unpacking libasound2:amd64 (1.2.2-2.1ubuntu2.3) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../26-libgraphite2-3_1.3.13-11build1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.13-11build1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../27-libharfbuzz0b_2.6.4-1ubuntu4_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.6.4-1ubuntu4) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../28-libpcsclite1_1.8.26-3_amd64.deb ... Unpacking libpcsclite1:amd64 (1.8.26-3) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../29-libxi6_2%3a1.7.10-0ubuntu1_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.10-0ubuntu1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../30-libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../31-x11-common_1%3a7.7+19ubuntu14_all.deb ... dpkg-query: no packages found matching nux-tools Unpacking x11-common (1:7.7+19ubuntu14) ... Selecting previously unselected package libxtst6:amd64. Preparing to unpack .../32-libxtst6_2%3a1.2.3-1_amd64.deb ... Unpacking libxtst6:amd64 (2:1.2.3-1) ... Selecting previously unselected package openjdk-11-jre-headless:amd64. Preparing to unpack .../33-openjdk-11-jre-headless_11.0.10+9-0ubuntu1~20.04_amd64.deb ... Unpacking openjdk-11-jre-headless:amd64 (11.0.10+9-0ubuntu1~20.04) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../34-default-jre-headless_2%3a1.11-72_amd64.deb ... Unpacking default-jre-headless (2:1.11-72) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../35-ca-certificates-java_20190405ubuntu1_all.deb ... Unpacking ca-certificates-java (20190405ubuntu1) ... Selecting previously unselected package libjaxen-java. Preparing to unpack .../36-libjaxen-java_1.1.6-4_all.deb ... Unpacking libjaxen-java (1.1.6-4) ... Selecting previously unselected package libdom4j-java. Preparing to unpack .../37-libdom4j-java_2.1.1-2_all.deb ... Unpacking libdom4j-java (2.1.1-2) ... Selecting previously unselected package libicu4j-java. Preparing to unpack .../38-libicu4j-java_62.1-2_all.deb ... Unpacking libicu4j-java (62.1-2) ... Selecting previously unselected package libjetbrains-annotations-java. Preparing to unpack .../39-libjetbrains-annotations-java_19.0.0-1_all.deb ... Unpacking libjetbrains-annotations-java (19.0.0-1) ... Selecting previously unselected package libintellij-annotations-java. Preparing to unpack .../40-libintellij-annotations-java_19.0.0-1_all.deb ... Unpacking libintellij-annotations-java (19.0.0-1) ... Selecting previously unselected package libjdom1-java. Preparing to unpack .../41-libjdom1-java_1.1.3-2_all.deb ... Unpacking libjdom1-java (1.1.3-2) ... Selecting previously unselected package libxml-commons-resolver1.1-java. Preparing to unpack .../42-libxml-commons-resolver1.1-java_1.2-9_all.deb ... Unpacking libxml-commons-resolver1.1-java (1.2-9) ... Selecting previously unselected package libxml-commons-external-java. Preparing to unpack .../43-libxml-commons-external-java_1.4.01-3_all.deb ... Unpacking libxml-commons-external-java (1.4.01-3) ... Selecting previously unselected package libxerces2-java. Preparing to unpack .../44-libxerces2-java_2.12.1-1_all.deb ... Unpacking libxerces2-java (2.12.1-1) ... Selecting previously unselected package libxom-java. Preparing to unpack .../45-libxom-java_1.2.10-1_all.deb ... Unpacking libxom-java (1.2.10-1) ... Selecting previously unselected package libsaxonhe-java. Preparing to unpack .../46-libsaxonhe-java_9.9.1.5+dfsg-1_all.deb ... Unpacking libsaxonhe-java (9.9.1.5+dfsg-1) ... Setting up libgraphite2-3:amd64 (1.3.13-11build1) ... Setting up liblcms2-2:amd64 (2.9-4) ... Setting up libjetbrains-annotations-java (19.0.0-1) ... Setting up libxau6:amd64 (1:1.0.9-0ubuntu1) ... Setting up libicu4j-java (62.1-2) ... Setting up java-common (0.72) ... Setting up x11-common (1:7.7+19ubuntu14) ... debconf: unable to initialize frontend: Dialog debconf: (TERM is not set, so the dialog frontend is not usable.) debconf: falling back to frontend: Readline update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libintellij-annotations-java (19.0.0-1) ... Setting up libasound2-data (1.2.2-2.1ubuntu2.3) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libx11-data (2:1.6.9-2ubuntu1.1) ... Setting up libnspr4:amd64 (2:4.25-1) ... Setting up libavahi-common-data:amd64 (0.7-4ubuntu7) ... Setting up libdbus-1-3:amd64 (1.12.16-2ubuntu2.1) ... Setting up libpng16-16:amd64 (1.6.37-2) ... Setting up libxml-commons-resolver1.1-java (1.2-9) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpcsclite1:amd64 (1.8.26-3) ... Setting up ucf (3.0038+nmu1) ... debconf: unable to initialize frontend: Dialog debconf: (TERM is not set, so the dialog frontend is not usable.) debconf: falling back to frontend: Readline Setting up libjpeg-turbo8:amd64 (2.0.3-0ubuntu1.20.04.1) ... Setting up libxml-commons-external-java (1.4.01-3) ... Setting up libasound2:amd64 (1.2.2-2.1ubuntu2.3) ... Setting up libxerces2-java (2.12.1-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libdom4j-java (2.1.1-2) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu1) ... Setting up libxcb1:amd64 (1.14-2) ... Setting up fontconfig-config (2.13.1-2ubuntu3) ... Setting up libjdom1-java (1.1.3-2) ... Setting up libavahi-common3:amd64 (0.7-4ubuntu7) ... Setting up libnss3:amd64 (2:3.49.1-1ubuntu1.5) ... Setting up libxom-java (1.2.10-1) ... Setting up libfreetype6:amd64 (2.10.1-2ubuntu0.1) ... Setting up libx11-6:amd64 (2:1.6.9-2ubuntu1.1) ... Setting up libharfbuzz0b:amd64 (2.6.4-1ubuntu4) ... Setting up libfontconfig1:amd64 (2.13.1-2ubuntu3) ... Setting up libavahi-client3:amd64 (0.7-4ubuntu7) ... Setting up libsaxonhe-java (9.9.1.5+dfsg-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu1) ... Setting up libcups2:amd64 (2.3.1-9ubuntu1.1) ... Setting up libxi6:amd64 (2:1.7.10-0ubuntu1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up default-jre-headless (2:1.11-72) ... Setting up openjdk-11-jre-headless:amd64 (11.0.10+9-0ubuntu1~20.04) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ca-certificates-java (20190405ubuntu1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:ISRG_Root_X1.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certigna.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:GTS_Root_R4.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Certigna_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:EC-ACC.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Izenpe.com.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:ACCVRAIZ1.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:GTS_Root_R2.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:GTS_Root_R1.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:DST_Root_CA_X3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:Secure_Global_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:SecureTrust_CA.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:AffirmTrust_Networking.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:AffirmTrust_Premium.pem Adding debian:GTS_Root_R3.pem done. Processing triggers for libc-bin (2.31-0ubuntu9.2) ... Processing triggers for ca-certificates (20210119~20.04.1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. './local.pdbg' -> '/opt/cp2k-toolchain/install/arch/local.pdbg' './local.psmp' -> '/opt/cp2k-toolchain/install/arch/local.psmp' './local.sdbg' -> '/opt/cp2k-toolchain/install/arch/local.sdbg' './local.ssmp' -> '/opt/cp2k-toolchain/install/arch/local.ssmp' './local_coverage.pdbg' -> '/opt/cp2k-toolchain/install/arch/local_coverage.pdbg' './local_valgrind.psmp' -> '/opt/cp2k-toolchain/install/arch/local_valgrind.psmp' './local_valgrind.ssmp' -> '/opt/cp2k-toolchain/install/arch/local_valgrind.ssmp' './local_warn.psmp' -> '/opt/cp2k-toolchain/install/arch/local_warn.psmp' Warming cache by trying to compile... done. Removing intermediate container 73a982ae0365 ---> d7a6749a1cea Step 8/9 : COPY ./scripts/ci_entrypoint.sh ./scripts/test_manual.sh ./ ---> 98399d568932 Step 9/9 : CMD ["./ci_entrypoint.sh", "./test_manual.sh"] ---> Running in 144be1eafc0f Removing intermediate container 144be1eafc0f ---> b91b7f11292c Successfully built b91b7f11292c Successfully tagged gcr.io/cp2k-org-project/img_cp2k-manual-arch-f73:gittree-9828083-buildargs-ee9733c Pushing image cp2k-manual... done. #################### Running Image cp2k-manual #################### ========== Fetching Git Commit ========== CommitSHA: 27588553a701cf8a68abf65255643b9878d22bbe CommitTime: 2021-03-19 08:39:05 +0100 CommitAuthor: Ole Schütt CommitSubject: grid: Add optimized branches for lp <= 2 to GPU kernels ========== Running Test ========== ========== Compiling CP2K ========== Compiling cp2k... done. ========== Generating Manual ========== CP2K version 9.0 (Development Version) Source code revision git:2758855 cp2kflags: omp libint fftw3 libxc pexsi elpa parallel mpi3 scalapack quip smm_dnn smm xsmm plumed2 spglib sirius libvori libbqb compiler: GCC version 10.2.0 compiler options: -cpp -I /opt/cp2k-toolchain/install/mpich-3.3.2/include -I /opt/cp2k -toolchain/install/openblas-0.3.10/include -I /opt/cp2k-toolchain/in stall/fftw-3.3.8/include -I /opt/cp2k-toolchain/install/libint-v2.6. 0-cp2k-lmax-5/include -I /opt/cp2k-toolchain/install/libxc-5.1.2/inc lude -I /opt/cp2k-toolchain/install/libxsmm-1.16.1/include -I /opt/c p2k-toolchain/install/cosma-2.2.0/include -I /opt/cp2k-toolchain/ins tall/elpa-2020.11.001/cpu/include/elpa_openmp-2020.11.001/modules -I /opt/cp2k-toolchain/install/elpa-2020.11.001/cpu/include/elpa_openm p-2020.11.001/elpa -I /opt/cp2k-toolchain/install/scotch-6.0.0/inclu de -I /opt/cp2k-toolchain/install/superlu_dist-6.1.0/include -I /opt /cp2k-toolchain/install/pexsi-1.2.0/include -I /opt/cp2k-toolchain/i nstall/quip-1ff93b3400b83e804f0f2e857e70c5e4133d9705/include -I /opt /cp2k-toolchain/install/gsl-2.6/include -I /opt/cp2k-toolchain/insta ll/hdf5-1.12.0/include -I /opt/cp2k-toolchain/install/libvdwxc-0.4.0 /include -I /opt/cp2k-toolchain/install/spglib-1.16.0/include -I /op t/cp2k-toolchain/install/SpFFT-0.9.13/include -I /opt/cp2k-toolchain /install/SpLA-1.2.1/include -I /opt/cp2k-toolchain/install/sirius-7. 0.2/include -I /workspace/cp2k/src/start/ -I /workspace/cp2k/obj/loc al/psmp/exts/dbcsr -I /opt/cp2k-toolchain/install/mpich-3.3.2/includ e -I /opt/cp2k-toolchain/install/mpich-3.3.2/include -imultiarch x86 _64-linux-gnu -D_REENTRANT -D __LIBXSMM -D __parallel -D __FFTW3 -D __LIBINT -D __LIBXC -D __HAS_smm_dnn -D __SCALAPACK -D __COSMA -D __ ELPA -D __LIBPEXSI -D __QUIP -D __GSL -D __PLUMED2 -D __HDF5 -D __LI BVDWXC -D __SPGLIB -D __LIBVORI -D __SPFFT -D __SPLA -D __SIRIUS -D __COMPILE_ARCH="local" -D __COMPILE_DATE="Fri Mar 19 11:24:54 UTC 20 21" -D __COMPILE_HOST="2e2edcaa6fc6" -D __COMPILE_REVISION="git:2758 855" -D __DATA_DIR="/workspace/cp2k/data" -D __SHORT_FILE__="start/c p2k.F" -march=skylake-avx512 -mmmx -mno-3dnow -msse -msse2 -msse3 -m ssse3 -mno-sse4a -mcx16 -msahf -mmovbe -maes -mno-sha -mpclmul -mpop cnt -mabm -mno-lwp -mfma -mno-fma4 -mno-xop -mbmi -mno-sgx -mbmi2 -m no-pconfig -mno-wbnoinvd -mno-tbm -mavx -mavx2 -msse4.2 -msse4.1 -ml zcnt -mrtm -mhle -mrdrnd -mf16c -mfsgsbase -mrdseed -mprfchw -madx - mfxsr -mxsave -mxsaveopt -mavx512f -mno-avx512er -mavx512cd -mno-avx 512pf -mno-prefetchwt1 -mclflushopt -mxsavec -mxsaves -mavx512dq -ma vx512bw -mavx512vl -mno-avx512ifma -mno-avx512vbmi -mno-avx5124fmaps -mno-avx5124vnniw -mclwb -mno-mwaitx -mno-clzero -mno-pku -mno-rdpi d -mno-gfni -mno-shstk -mno-avx512vbmi2 -mno-avx512vnni -mno-vaes -m no-vpclmulqdq -mno-avx512bitalg -mno-avx512vpopcntdq -mno-movdiri -m no-movdir64b -mno-waitpkg -mno-cldemote -mno-ptwrite -mno-avx512bf16 -mno-enqcmd -mno-avx512vp2intersect --param=l1-cache-size=32 --para m=l1-cache-line-size=64 --param=l2-cache-size=39424 -mtune=skylake-a vx512 -g -g -O2 -O3 -Werror=aliasing -Werror=ampersand -Werror=c-bin ding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=li ne-truncation -Werror=tabs -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unu sed-dummy-argument -Werror=conversion -Werror=zerotrip -Wno-maybe-un initialized -Wuninitialized -Wuse-without-only -std=f2008 -fallow-ar gument-mismatch -fno-omit-frame-pointer -funroll-loops -fopenmp -fba cktrace -ffree-form -fimplicit-none -fpre-include=/usr/include/fincl ude/math-vector-fortran.h Summary: Manual generation works fine. Status: OK Uploading artifacts... done EndDate: 2021-03-19 11:25:35+00:00