StartDate: 2022-02-28 11:02:14+00:00 CpuId: 32x Intel Xeon W 2000 / D-2100 (Skylake / Cascade Lake) {Skylake}, 14nm CommitSHA: 2e6367024a297e833823c1085e0d4b7f48dd4c0d CommitTime: 2022-02-28 11:46:44 +0100 CommitAuthor: Juerg Hutter CommitSubject: MOLOPT Basis for Au q19, fix Pt q18 (#1969) Populating docker build cache... done. #################### Building Image cp2k-manual #################### Dockerfile: /tools/docker/Dockerfile.test_manual Build-Path: / Build-Args: GIT_COMMIT_SHA=2e6367024a297e833823c1085e0d4b7f48dd4c0d Sending build context to Docker daemon 362.2MB Step 1/43 : FROM ubuntu:20.04 20.04: Pulling from library/ubuntu 08c01a0ec47e: Already exists Digest: sha256:669e010b58baf5beb2836b253c1fd5768333f0d1dbcb834f7c07a4dc93f474be Status: Downloaded newer image for ubuntu:20.04 ---> 54c9d81cbb44 Step 2/43 : WORKDIR /opt/cp2k-toolchain ---> Using cache ---> 3a843b424587 Step 3/43 : COPY ./tools/toolchain/install_requirements*.sh ./ ---> Using cache ---> 9621b4b5709d Step 4/43 : RUN ./install_requirements.sh ubuntu:20.04 ---> Using cache ---> c1cdc0430e60 Step 5/43 : RUN mkdir scripts ---> Using cache ---> 3877592c52c6 Step 6/43 : COPY ./tools/toolchain/scripts/VERSION ./tools/toolchain/scripts/parse_if.py ./tools/toolchain/scripts/tool_kit.sh ./tools/toolchain/scripts/common_vars.sh ./tools/toolchain/scripts/signal_trap.sh ./tools/toolchain/scripts/get_openblas_arch.sh ./scripts/ ---> Using cache ---> 924d174bd2f7 Step 7/43 : COPY ./tools/toolchain/install_cp2k_toolchain.sh . ---> Using cache ---> 7fb97c32b287 Step 8/43 : RUN ./install_cp2k_toolchain.sh --install-all --mpi-mode=mpich --dry-run ---> Using cache ---> bbadc4f47f53 Step 9/43 : COPY ./tools/toolchain/scripts/stage0/ ./scripts/stage0/ ---> Using cache ---> 08941936a9ff Step 10/43 : RUN ./scripts/stage0/install_stage0.sh && rm -rf ./build ---> Using cache ---> 73ae15fda692 Step 11/43 : COPY ./tools/toolchain/scripts/stage1/ ./scripts/stage1/ ---> Using cache ---> fbfb1d7faaef Step 12/43 : RUN ./scripts/stage1/install_stage1.sh && rm -rf ./build ---> Using cache ---> 91a9df073cd3 Step 13/43 : COPY ./tools/toolchain/scripts/stage2/ ./scripts/stage2/ ---> Using cache ---> d9b1bbaa6218 Step 14/43 : RUN ./scripts/stage2/install_stage2.sh && rm -rf ./build ---> Using cache ---> fc7b7ac22079 Step 15/43 : COPY ./tools/toolchain/scripts/stage3/ ./scripts/stage3/ ---> Using cache ---> 86e93a8718fd Step 16/43 : RUN ./scripts/stage3/install_stage3.sh && rm -rf ./build ---> Using cache ---> 6a93f89b7991 Step 17/43 : COPY ./tools/toolchain/scripts/stage4/ ./scripts/stage4/ ---> Using cache ---> b17daab24faf Step 18/43 : RUN ./scripts/stage4/install_stage4.sh && rm -rf ./build ---> Using cache ---> ac1bef8e032a Step 19/43 : COPY ./tools/toolchain/scripts/stage5/ ./scripts/stage5/ ---> Using cache ---> 5ce1104ca234 Step 20/43 : RUN ./scripts/stage5/install_stage5.sh && rm -rf ./build ---> Using cache ---> 7d9b14a4b5c3 Step 21/43 : COPY ./tools/toolchain/scripts/stage6/ ./scripts/stage6/ ---> Using cache ---> b5d4cd5cf81a Step 22/43 : RUN ./scripts/stage6/install_stage6.sh && rm -rf ./build ---> Using cache ---> 02533825d5a1 Step 23/43 : COPY ./tools/toolchain/scripts/stage7/ ./scripts/stage7/ ---> Using cache ---> a49032142fd6 Step 24/43 : RUN ./scripts/stage7/install_stage7.sh && rm -rf ./build ---> Using cache ---> ea8efb993f5a Step 25/43 : COPY ./tools/toolchain/scripts/stage8/ ./scripts/stage8/ ---> Using cache ---> f77c94b68c97 Step 26/43 : RUN ./scripts/stage8/install_stage8.sh && rm -rf ./build ---> Using cache ---> b06a1382c04f Step 27/43 : COPY ./tools/toolchain/scripts/arch_base.tmpl ./tools/toolchain/scripts/generate_arch_files.sh ./scripts/ ---> Using cache ---> 142b1ca9fb2f Step 28/43 : RUN ./scripts/generate_arch_files.sh && rm -rf ./build ---> Using cache ---> 33d8da7a2091 Step 29/43 : WORKDIR /workspace/cp2k ---> Using cache ---> 03d7e5ec7430 Step 30/43 : ARG GIT_COMMIT_SHA ---> Running in 3bb2d9689791 Removing intermediate container 3bb2d9689791 ---> f2e1d3070954 Step 31/43 : COPY ./Makefile . ---> 2aa7db4f9df2 Step 32/43 : COPY ./src ./src ---> b1b75ba35025 Step 33/43 : COPY ./exts ./exts ---> f36fcdc57d3f Step 34/43 : COPY ./tools/build_utils ./tools/build_utils ---> 979229941abd Step 35/43 : RUN /bin/bash -c " if [ -n "${GIT_COMMIT_SHA}" ] ; then echo "git:\${GIT_COMMIT_SHA::7}" > REVISION; fi && mkdir -p arch && ln -vs /opt/cp2k-toolchain/install/arch/local.psmp ./arch/ && echo 'Compiling cp2k...' && source /opt/cp2k-toolchain/install/setup && ( make -j ARCH=local VERSION=psmp &> /dev/null || true )" ---> Running in 38aed5066d49 './arch/local.psmp' -> '/opt/cp2k-toolchain/install/arch/local.psmp' Compiling cp2k... Removing intermediate container 38aed5066d49 ---> 2a243783c2fe Step 36/43 : COPY ./data ./data ---> ac70b1470bd0 Step 37/43 : COPY ./tests ./tests ---> d06e05f8700d Step 38/43 : COPY ./tools/regtesting ./tools/regtesting ---> 685369b9b013 Step 39/43 : COPY ./tools/manual ./tools/manual ---> e01c444d8574 Step 40/43 : COPY ./tools/input_editing ./tools/input_editing ---> 47cdf4f3db50 Step 41/43 : COPY ./tools/docker/scripts/test_manual.sh . ---> 1dfb9506229d Step 42/43 : RUN ./test_manual.sh 2>&1 | tee report.log ---> Running in 5570a20a76df ========== Compiling CP2K ========== Compiling cp2k... done. ========== Installing Dependencies ========== debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libdbus-1-3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14726 files and directories currently installed.) Preparing to unpack .../00-libdbus-1-3_1.12.16-2ubuntu2.1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.16-2ubuntu2.1) ... Selecting previously unselected package ucf. Preparing to unpack .../01-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../02-libpng16-16_1.6.37-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-2) ... Selecting previously unselected package java-common. Preparing to unpack .../03-java-common_0.72_all.deb ... Unpacking java-common (0.72) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../04-libavahi-common-data_0.7-4ubuntu7.1_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.7-4ubuntu7.1) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../05-libavahi-common3_0.7-4ubuntu7.1_amd64.deb ... Unpacking libavahi-common3:amd64 (0.7-4ubuntu7.1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../06-libavahi-client3_0.7-4ubuntu7.1_amd64.deb ... Unpacking libavahi-client3:amd64 (0.7-4ubuntu7.1) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../07-libcups2_2.3.1-9ubuntu1.1_amd64.deb ... Unpacking libcups2:amd64 (2.3.1-9ubuntu1.1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../08-liblcms2-2_2.9-4_amd64.deb ... Unpacking liblcms2-2:amd64 (2.9-4) ... Selecting previously unselected package libjpeg-turbo8:amd64. Preparing to unpack .../09-libjpeg-turbo8_2.0.3-0ubuntu1.20.04.1_amd64.deb ... Unpacking libjpeg-turbo8:amd64 (2.0.3-0ubuntu1.20.04.1) ... Selecting previously unselected package libjpeg8:amd64. Preparing to unpack .../10-libjpeg8_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../11-libfreetype6_2.10.1-2ubuntu0.1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.1-2ubuntu0.1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../12-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../13-fontconfig-config_2.13.1-2ubuntu3_all.deb ... Unpacking fontconfig-config (2.13.1-2ubuntu3) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../14-libfontconfig1_2.13.1-2ubuntu3_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-2ubuntu3) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../15-libnspr4_2%3a4.25-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.25-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../16-libnss3_2%3a3.49.1-1ubuntu1.6_amd64.deb ... Unpacking libnss3:amd64 (2:3.49.1-1ubuntu1.6) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../17-libasound2-data_1.2.2-2.1ubuntu2.5_all.deb ... Unpacking libasound2-data (1.2.2-2.1ubuntu2.5) ... Selecting previously unselected package libasound2:amd64. Preparing to unpack .../18-libasound2_1.2.2-2.1ubuntu2.5_amd64.deb ... Unpacking libasound2:amd64 (1.2.2-2.1ubuntu2.5) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../19-libgraphite2-3_1.3.13-11build1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.13-11build1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../20-libharfbuzz0b_2.6.4-1ubuntu4_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.6.4-1ubuntu4) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../21-libpcsclite1_1.8.26-3_amd64.deb ... Unpacking libpcsclite1:amd64 (1.8.26-3) ... Selecting previously unselected package openjdk-11-jre-headless:amd64. Preparing to unpack .../22-openjdk-11-jre-headless_11.0.13+8-0ubuntu1~20.04_amd64.deb ... Unpacking openjdk-11-jre-headless:amd64 (11.0.13+8-0ubuntu1~20.04) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../23-default-jre-headless_2%3a1.11-72_amd64.deb ... Unpacking default-jre-headless (2:1.11-72) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../24-ca-certificates-java_20190405ubuntu1_all.deb ... Unpacking ca-certificates-java (20190405ubuntu1) ... Selecting previously unselected package libjaxen-java. Preparing to unpack .../25-libjaxen-java_1.1.6-4_all.deb ... Unpacking libjaxen-java (1.1.6-4) ... Selecting previously unselected package libdom4j-java. Preparing to unpack .../26-libdom4j-java_2.1.1-2_all.deb ... Unpacking libdom4j-java (2.1.1-2) ... Selecting previously unselected package libicu4j-java. Preparing to unpack .../27-libicu4j-java_62.1-2_all.deb ... Unpacking libicu4j-java (62.1-2) ... Selecting previously unselected package libjetbrains-annotations-java. Preparing to unpack .../28-libjetbrains-annotations-java_19.0.0-1_all.deb ... Unpacking libjetbrains-annotations-java (19.0.0-1) ... Selecting previously unselected package libintellij-annotations-java. Preparing to unpack .../29-libintellij-annotations-java_19.0.0-1_all.deb ... Unpacking libintellij-annotations-java (19.0.0-1) ... Selecting previously unselected package libjdom1-java. Preparing to unpack .../30-libjdom1-java_1.1.3-2_all.deb ... Unpacking libjdom1-java (1.1.3-2) ... Selecting previously unselected package libxml-commons-resolver1.1-java. Preparing to unpack .../31-libxml-commons-resolver1.1-java_1.2-9_all.deb ... Unpacking libxml-commons-resolver1.1-java (1.2-9) ... Selecting previously unselected package libxml-commons-external-java. Preparing to unpack .../32-libxml-commons-external-java_1.4.01-3_all.deb ... Unpacking libxml-commons-external-java (1.4.01-3) ... Selecting previously unselected package libxerces2-java. Preparing to unpack .../33-libxerces2-java_2.12.1-1_all.deb ... Unpacking libxerces2-java (2.12.1-1) ... Selecting previously unselected package libxom-java. Preparing to unpack .../34-libxom-java_1.2.10-1_all.deb ... Unpacking libxom-java (1.2.10-1) ... Selecting previously unselected package libsaxonhe-java. Preparing to unpack .../35-libsaxonhe-java_9.9.1.5+dfsg-1_all.deb ... Unpacking libsaxonhe-java (9.9.1.5+dfsg-1) ... Setting up libgraphite2-3:amd64 (1.3.13-11build1) ... Setting up liblcms2-2:amd64 (2.9-4) ... Setting up libjetbrains-annotations-java (19.0.0-1) ... Setting up libicu4j-java (62.1-2) ... Setting up java-common (0.72) ... Setting up libintellij-annotations-java (19.0.0-1) ... Setting up libasound2-data (1.2.2-2.1ubuntu2.5) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libnspr4:amd64 (2:4.25-1) ... Setting up libavahi-common-data:amd64 (0.7-4ubuntu7.1) ... Setting up libdbus-1-3:amd64 (1.12.16-2ubuntu2.1) ... Setting up libpng16-16:amd64 (1.6.37-2) ... Setting up libxml-commons-resolver1.1-java (1.2-9) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpcsclite1:amd64 (1.8.26-3) ... Setting up ucf (3.0038+nmu1) ... debconf: unable to initialize frontend: Dialog debconf: (TERM is not set, so the dialog frontend is not usable.) debconf: falling back to frontend: Readline Setting up libjpeg-turbo8:amd64 (2.0.3-0ubuntu1.20.04.1) ... Setting up libxml-commons-external-java (1.4.01-3) ... Setting up libasound2:amd64 (1.2.2-2.1ubuntu2.5) ... Setting up libxerces2-java (2.12.1-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libdom4j-java (2.1.1-2) ... Setting up fontconfig-config (2.13.1-2ubuntu3) ... Setting up libjdom1-java (1.1.3-2) ... Setting up libavahi-common3:amd64 (0.7-4ubuntu7.1) ... Setting up libnss3:amd64 (2:3.49.1-1ubuntu1.6) ... Setting up libxom-java (1.2.10-1) ... Setting up libfreetype6:amd64 (2.10.1-2ubuntu0.1) ... Setting up libharfbuzz0b:amd64 (2.6.4-1ubuntu4) ... Setting up libfontconfig1:amd64 (2.13.1-2ubuntu3) ... Setting up libavahi-client3:amd64 (0.7-4ubuntu7.1) ... Setting up libsaxonhe-java (9.9.1.5+dfsg-1) ... Setting up libcups2:amd64 (2.3.1-9ubuntu1.1) ... Setting up ca-certificates-java (20190405ubuntu1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:certSIGN_ROOT_CA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:SecureTrust_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:ISRG_Root_X1.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:GTS_Root_R1.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:GTS_Root_R2.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Izenpe.com.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:GTS_Root_R3.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:GTS_Root_R4.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:EC-ACC.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:AffirmTrust_Premium.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:AffirmTrust_Networking.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:ACCVRAIZ1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Certigna.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem done. Setting up default-jre-headless (2:1.11-72) ... Processing triggers for libc-bin (2.31-0ubuntu9.2) ... Processing triggers for ca-certificates (20210119~20.04.2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Setting up openjdk-11-jre-headless:amd64 (11.0.13+8-0ubuntu1~20.04) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode ========== Generating Manual ========== CP2K version 10.0 (Development Version) Source code revision git:2e63670 cp2kflags: omp libint fftw3 libxc pexsi elpa parallel mpi3 scalapack cosma quip smm_dnn smm xsmm plumed2 spglib sirius libvori libbqb compiler: GCC version 11.2.0 compiler options: -cpp -I /opt/cp2k-toolchain/install/mpich-3.3.2/include -I /opt/cp2k -toolchain/install/openblas-0.3.19/include -I /opt/cp2k-toolchain/in stall/fftw-3.3.10/include -I /opt/cp2k-toolchain/install/libint-v2.6 .0-cp2k-lmax-5/include -I /opt/cp2k-toolchain/install/libxc-5.2.2/in clude -I /opt/cp2k-toolchain/install/libxsmm-1.17/include -I /opt/cp 2k-toolchain/install/COSMA-2.5.1/include -I /opt/cp2k-toolchain/inst all/elpa-2021.11.002/cpu/include/elpa_openmp-2021.11.002/modules -I /opt/cp2k-toolchain/install/elpa-2021.11.002/cpu/include/elpa_openmp -2021.11.002/elpa -I /opt/cp2k-toolchain/install/scotch-6.0.0/includ e -I /opt/cp2k-toolchain/install/superlu_dist-6.1.0/include -I /opt/ cp2k-toolchain/install/pexsi-1.2.0/include -I /opt/cp2k-toolchain/in stall/quip-b4336484fb65b0e73211a8f920ae4361c7c353fd/include -I /opt/ cp2k-toolchain/install/gsl-2.7/include -I /opt/cp2k-toolchain/instal l/hdf5-1.12.0/include -I /opt/cp2k-toolchain/install/libvdwxc-0.4.0/ include -I /opt/cp2k-toolchain/install/spglib-1.16.2/include -I /opt /cp2k-toolchain/install/SpFFT-1.0.5/include -I /opt/cp2k-toolchain/i nstall/SpLA-1.5.2/include -I /opt/cp2k-toolchain/install/sirius-7.3. 1/include -I /workspace/cp2k/src/start/ -I /workspace/cp2k/obj/local /psmp/exts/dbcsr -I /opt/cp2k-toolchain/install/mpich-3.3.2/include -I /opt/cp2k-toolchain/install/mpich-3.3.2/include -imultiarch x86_6 4-linux-gnu -D_REENTRANT -D __LIBXSMM -D __parallel -D __FFTW3 -D __ LIBINT -D __LIBXC -D __HAS_smm_dnn -D __SCALAPACK -D __COSMA -D __EL PA -D __LIBPEXSI -D __QUIP -D __GSL -D __PLUMED2 -D __HDF5 -D __LIBV DWXC -D __SPGLIB -D __LIBVORI -D __SPFFT -D __SPLA -D __SIRIUS -D __ COMPILE_ARCH="local" -D __COMPILE_DATE="Mon Feb 28 11:13:42 UTC 2022 " -D __COMPILE_HOST="38aed5066d49" -D __COMPILE_REVISION="git:2e6367 0" -D __DATA_DIR="/workspace/cp2k/data" -D __SHORT_FILE__="start/cp2 k.F" -march=skylake-avx512 -mmmx -mpopcnt -msse -msse2 -msse3 -mssse 3 -msse4.1 -msse4.2 -mavx -mavx2 -mno-sse4a -mno-fma4 -mno-xop -mfma -mavx512f -mbmi -mbmi2 -maes -mpclmul -mavx512vl -mavx512bw -mavx51 2dq -mavx512cd -mno-avx512er -mno-avx512pf -mno-avx512vbmi -mno-avx5 12ifma -mno-avx5124vnniw -mno-avx5124fmaps -mno-avx512vpopcntdq -mno -avx512vbmi2 -mno-gfni -mno-vpclmulqdq -mno-avx512vnni -mno-avx512bi talg -mno-avx512bf16 -mno-avx512vp2intersect -mno-3dnow -madx -mabm -mno-cldemote -mclflushopt -mclwb -mno-clzero -mcx16 -mno-enqcmd -mf 16c -mfsgsbase -mfxsr -mhle -msahf -mno-lwp -mlzcnt -mmovbe -mno-mov dir64b -mno-movdiri -mno-mwaitx -mno-pconfig -mno-pku -mno-prefetchw t1 -mprfchw -mno-ptwrite -mno-rdpid -mrdrnd -mrdseed -mrtm -mno-seri alize -mno-sgx -mno-sha -mno-shstk -mno-tbm -mno-tsxldtrk -mno-vaes -mno-waitpkg -mno-wbnoinvd -mxsave -mxsavec -mxsaveopt -mxsaves -mno -amx-tile -mno-amx-int8 -mno-amx-bf16 -mno-uintr -mno-hreset -mno-kl -mno-widekl -mno-avxvnni --param=l1-cache-size=32 --param=l1-cache- line-size=64 --param=l2-cache-size=39424 -mtune=skylake-avx512 -g -g -O2 -O3 -Werror=aliasing -Werror=ampersand -Werror=c-binding-type - Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncati on -Werror=tabs -Werror=target-lifetime -Werror=underflow -Werror=un used-but-set-variable -Werror=unused-variable -Werror=unused-dummy-a rgument -Werror=conversion -Werror=zerotrip -Wno-maybe-uninitialized -Wuninitialized -Wuse-without-only -std=f2008 -fPIC -fallow-argumen t-mismatch -fno-omit-frame-pointer -fopenmp -funroll-loops -fbacktra ce -ffree-form -fimplicit-none -fpre-include=/usr/include/finclude/m ath-vector-fortran.h Summary: Manual generation works fine. Status: OK Removing intermediate container 5570a20a76df ---> dbbe04a33569 Step 43/43 : CMD cat $(find ./report.log -mmin +10) | sed '/^Summary:/ s/$/ (cached)/' ---> Running in 667a75a015a1 Removing intermediate container 667a75a015a1 ---> 6afe73a1e6c4 Successfully built 6afe73a1e6c4 Successfully tagged gcr.io/cp2k-org-project/img_cp2k-manual-arch-b51:master Pushing new image... done. #################### Running Image cp2k-manual #################### Uploading artifacts... done EndDate: 2022-02-28 11:17:25+00:00