StartDate: 2021-12-16 11:02:30+00:00 CpuId: 32x Intel Xeon W 2000 / D-2100 (Skylake / Cascade Lake) {Skylake}, 14nm CommitSHA: 67dc77c1ebf6c3236617eea57c60062de8a5af0c CommitTime: 2021-12-16 09:35:13 +0100 CommitAuthor: Alfio Lazzaro CommitSubject: Avoid ELPA for small benchmarks (#1811) Trying to pull image cp2k-toolchain-mpich... image not found. #################### Building Image cp2k-toolchain-mpich #################### Dockerfile: /tools/toolchain/Dockerfile Build-Args: Sending build context to Docker daemon 511kB Step 1/35 : ARG BASE_IMAGE=ubuntu:20.04 Step 2/35 : FROM ${BASE_IMAGE} 20.04: Pulling from library/ubuntu 7b1a6ab2e44d: Already exists Digest: sha256:626ffe58f6e7566e00254b638eb7e0f3b11d4da9675088f4781a50ae288f3322 Status: Downloaded newer image for ubuntu:20.04 ---> ba6acccedd29 Step 3/35 : ARG MPI_MODE=mpich ---> Using cache ---> 8d0f4f845b67 Step 4/35 : ARG LIBINT_LMAX=5 ---> Using cache ---> 328bf8a1cfb6 Step 5/35 : ARG BASE_IMAGE ---> Using cache ---> 64a7013f6f31 Step 6/35 : USER root ---> Using cache ---> d495387c57ea Step 7/35 : COPY ./install_requirements*.sh ./ ---> Using cache ---> 62d2ffd96483 Step 8/35 : RUN ./install_requirements.sh ${BASE_IMAGE} ---> Using cache ---> 5bbadcc82e54 Step 9/35 : COPY ./install_tensorflow.sh ./ ---> Using cache ---> ad7d00908996 Step 10/35 : RUN ./install_tensorflow.sh ${BASE_IMAGE} ---> Using cache ---> 687054ce4b27 Step 11/35 : WORKDIR /opt/cp2k-toolchain ---> Using cache ---> a74db9f91234 Step 12/35 : RUN mkdir scripts ---> Using cache ---> acfbad2b72cc Step 13/35 : COPY ./scripts/VERSION ./scripts/parse_if.py ./scripts/tool_kit.sh ./scripts/common_vars.sh ./scripts/signal_trap.sh ./scripts/get_openblas_arch.sh ./scripts/ ---> Using cache ---> 7805881568f9 Step 14/35 : COPY ./install_cp2k_toolchain.sh . ---> Using cache ---> 1c3df2d11d01 Step 15/35 : RUN ./install_cp2k_toolchain.sh --install-all --mpi-mode=${MPI_MODE} --libint-lmax=${LIBINT_LMAX} --dry-run ---> Using cache ---> 065afe930148 Step 16/35 : COPY ./scripts/stage0/ ./scripts/stage0/ ---> Using cache ---> 5e97d7093a74 Step 17/35 : RUN ./scripts/stage0/install_stage0.sh && rm -rf ./build ---> Using cache ---> 6a77e07519d3 Step 18/35 : COPY ./scripts/stage1/ ./scripts/stage1/ ---> Using cache ---> 2488bead4095 Step 19/35 : RUN ./scripts/stage1/install_stage1.sh && rm -rf ./build ---> Using cache ---> f31e3d6f16d1 Step 20/35 : COPY ./scripts/stage2/ ./scripts/stage2/ ---> Using cache ---> 66db730aa549 Step 21/35 : RUN ./scripts/stage2/install_stage2.sh && rm -rf ./build ---> Using cache ---> 834090a46578 Step 22/35 : COPY ./scripts/stage3/ ./scripts/stage3/ ---> Using cache ---> 72bed55752f8 Step 23/35 : RUN ./scripts/stage3/install_stage3.sh && rm -rf ./build ---> Using cache ---> b67e33a982e3 Step 24/35 : COPY ./scripts/stage4/ ./scripts/stage4/ ---> Using cache ---> 2d51cd99fb77 Step 25/35 : RUN ./scripts/stage4/install_stage4.sh && rm -rf ./build ---> Using cache ---> 238bbd9f65ef Step 26/35 : COPY ./scripts/stage5/ ./scripts/stage5/ ---> Using cache ---> f560aeca4a99 Step 27/35 : RUN ./scripts/stage5/install_stage5.sh && rm -rf ./build ---> Using cache ---> 717922f94b94 Step 28/35 : COPY ./scripts/stage6/ ./scripts/stage6/ ---> Using cache ---> bd3b41d541bd Step 29/35 : RUN ./scripts/stage6/install_stage6.sh && rm -rf ./build ---> Using cache ---> b4564a38f340 Step 30/35 : COPY ./scripts/stage7/ ./scripts/stage7/ ---> Using cache ---> bc0dc35afb6e Step 31/35 : RUN ./scripts/stage7/install_stage7.sh && rm -rf ./build ---> Using cache ---> faa187574242 Step 32/35 : COPY ./scripts/stage8/ ./scripts/stage8/ ---> 82d89da760ba Step 33/35 : RUN ./scripts/stage8/install_stage8.sh && rm -rf ./build ---> Running in 88d6e1fc1465 ==================== Installing spfft ==================== SpFFT-1.0.5.tar.gz: OK Checksum of SpFFT-1.0.5.tar.gz Ok Installing from scratch into /opt/cp2k-toolchain/install/SpFFT-1.0.5 Step spfft took 8.00 seconds. ==================== Installing spla ==================== SpLA-1.5.2.tar.gz: OK Checksum of SpLA-1.5.2.tar.gz Ok Installing from scratch into /opt/cp2k-toolchain/install/SpLA-1.5.2 Step spla took 10.00 seconds. ==================== Installing SIRIUS ==================== SIRIUS-7.3.0.tar.gz: OK Checksum of SIRIUS-7.3.0.tar.gz Ok Installing from scratch into /opt/cp2k-toolchain/install/sirius-7.3.0 Step sirius took 125.00 seconds. Removing intermediate container 88d6e1fc1465 ---> 45dadf962882 Step 34/35 : COPY ./scripts/arch_base.tmpl ./scripts/generate_arch_files.sh ./scripts/ ---> 78d3cf65b2aa Step 35/35 : RUN ./scripts/generate_arch_files.sh && rm -rf ./build ---> Running in 2020c6e9011c ==================== generating arch files ==================== arch files can be found in the /opt/cp2k-toolchain/install/arch subdirectory Wrote /opt/cp2k-toolchain/install/arch/local.ssmp Wrote /opt/cp2k-toolchain/install/arch/local_static.ssmp Wrote /opt/cp2k-toolchain/install/arch/local.sdbg Wrote /opt/cp2k-toolchain/install/arch/local.psmp Wrote /opt/cp2k-toolchain/install/arch/local.pdbg Wrote /opt/cp2k-toolchain/install/arch/local_static.psmp Wrote /opt/cp2k-toolchain/install/arch/local_warn.psmp Wrote /opt/cp2k-toolchain/install/arch/local_coverage.pdbg ========================== usage ========================= Done! Now copy: cp /opt/cp2k-toolchain/install/arch/* to the cp2k/arch/ directory To use the installed tools and libraries and cp2k version compiled with it you will first need to execute at the prompt: source /opt/cp2k-toolchain/install/setup To build CP2K you should change directory: cd cp2k/ make -j 32 ARCH=local VERSION="ssmp sdbg psmp pdbg" arch files for GPU enabled CUDA versions are named "local_cuda.*" arch files for GPU enabled HIP versions are named "local_hip.*" arch files for coverage versions are named "local_coverage.*" Note that these pre-built arch files are for the GNU compiler, users have to adapt them for other compilers. It is possible to use the provided CP2K arch files as guidance. Removing intermediate container 2020c6e9011c ---> 83e969732df6 Successfully built 83e969732df6 Successfully tagged gcr.io/cp2k-org-project/img_cp2k-toolchain-mpich-arch-b51:gittree-bedb56d-buildargs-68b329d Pushing image cp2k-toolchain-mpich... done. Trying to pull image cp2k-manual... image not found. #################### Building Image cp2k-manual #################### Dockerfile: /tools/docker/Dockerfile.test_manual Build-Args: TOOLCHAIN=gcr.io/cp2k-org-project/img_cp2k-toolchain-mpich-arch-b51:gittree-bedb56d-buildargs-68b329d Sending build context to Docker daemon 77.31kB Step 1/9 : ARG TOOLCHAIN=cp2k/toolchain:latest Step 2/9 : FROM ${TOOLCHAIN} ---> 83e969732df6 Step 3/9 : WORKDIR /workspace ---> Running in b104007428cf Removing intermediate container b104007428cf ---> 3e67bce2c117 Step 4/9 : COPY ./scripts/install_basics.sh . ---> f97c6b089abb Step 5/9 : RUN ./install_basics.sh ---> Running in 5feff105d688 Installing Ubuntu packages... debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpopt0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15383 files and directories currently installed.) Preparing to unpack .../libpopt0_1.16-14_amd64.deb ... Unpacking libpopt0:amd64 (1.16-14) ... Selecting previously unselected package rsync. Preparing to unpack .../rsync_3.1.3-8ubuntu0.1_amd64.deb ... Unpacking rsync (3.1.3-8ubuntu0.1) ... Preparing to unpack .../wget_1.20.3-1ubuntu2_amd64.deb ... Unpacking wget (1.20.3-1ubuntu2) over (1.20.3-1ubuntu1) ... Setting up wget (1.20.3-1ubuntu2) ... Setting up libpopt0:amd64 (1.16-14) ... Setting up rsync (3.1.3-8ubuntu0.1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Processing triggers for libc-bin (2.31-0ubuntu9.2) ... done. Cloning cp2k repository... done. Removing intermediate container 5feff105d688 ---> c68dde9a744e Step 6/9 : COPY ./scripts/install_manual.sh . ---> a2decdc13629 Step 7/9 : RUN ./install_manual.sh ---> Running in f5b2f09c9b7a debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libdbus-1-3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15419 files and directories currently installed.) Preparing to unpack .../00-libdbus-1-3_1.12.16-2ubuntu2.1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.16-2ubuntu2.1) ... Selecting previously unselected package ucf. Preparing to unpack .../01-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libpng16-16:amd64. 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Unpacking libcups2:amd64 (2.3.1-9ubuntu1.1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../08-liblcms2-2_2.9-4_amd64.deb ... Unpacking liblcms2-2:amd64 (2.9-4) ... Selecting previously unselected package libjpeg-turbo8:amd64. Preparing to unpack .../09-libjpeg-turbo8_2.0.3-0ubuntu1.20.04.1_amd64.deb ... Unpacking libjpeg-turbo8:amd64 (2.0.3-0ubuntu1.20.04.1) ... Selecting previously unselected package libjpeg8:amd64. Preparing to unpack .../10-libjpeg8_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../11-libfreetype6_2.10.1-2ubuntu0.1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.1-2ubuntu0.1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../12-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. 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Unpacking libasound2:amd64 (1.2.2-2.1ubuntu2.5) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../19-libgraphite2-3_1.3.13-11build1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.13-11build1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../20-libharfbuzz0b_2.6.4-1ubuntu4_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.6.4-1ubuntu4) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../21-libpcsclite1_1.8.26-3_amd64.deb ... Unpacking libpcsclite1:amd64 (1.8.26-3) ... Selecting previously unselected package openjdk-11-jre-headless:amd64. Preparing to unpack .../22-openjdk-11-jre-headless_11.0.11+9-0ubuntu2~20.04_amd64.deb ... Unpacking openjdk-11-jre-headless:amd64 (11.0.11+9-0ubuntu2~20.04) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../23-default-jre-headless_2%3a1.11-72_amd64.deb ... Unpacking default-jre-headless (2:1.11-72) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../24-ca-certificates-java_20190405ubuntu1_all.deb ... Unpacking ca-certificates-java (20190405ubuntu1) ... Selecting previously unselected package libjaxen-java. Preparing to unpack .../25-libjaxen-java_1.1.6-4_all.deb ... Unpacking libjaxen-java (1.1.6-4) ... Selecting previously unselected package libdom4j-java. Preparing to unpack .../26-libdom4j-java_2.1.1-2_all.deb ... Unpacking libdom4j-java (2.1.1-2) ... Selecting previously unselected package libicu4j-java. Preparing to unpack .../27-libicu4j-java_62.1-2_all.deb ... Unpacking libicu4j-java (62.1-2) ... Selecting previously unselected package libjetbrains-annotations-java. Preparing to unpack .../28-libjetbrains-annotations-java_19.0.0-1_all.deb ... Unpacking libjetbrains-annotations-java (19.0.0-1) ... Selecting previously unselected package libintellij-annotations-java. 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Unpacking libxom-java (1.2.10-1) ... Selecting previously unselected package libsaxonhe-java. Preparing to unpack .../35-libsaxonhe-java_9.9.1.5+dfsg-1_all.deb ... Unpacking libsaxonhe-java (9.9.1.5+dfsg-1) ... Setting up libgraphite2-3:amd64 (1.3.13-11build1) ... Setting up liblcms2-2:amd64 (2.9-4) ... Setting up libjetbrains-annotations-java (19.0.0-1) ... Setting up libicu4j-java (62.1-2) ... Setting up java-common (0.72) ... Setting up libintellij-annotations-java (19.0.0-1) ... Setting up libasound2-data (1.2.2-2.1ubuntu2.5) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libnspr4:amd64 (2:4.25-1) ... Setting up libavahi-common-data:amd64 (0.7-4ubuntu7.1) ... Setting up libdbus-1-3:amd64 (1.12.16-2ubuntu2.1) ... Setting up libpng16-16:amd64 (1.6.37-2) ... Setting up libxml-commons-resolver1.1-java (1.2-9) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpcsclite1:amd64 (1.8.26-3) ... Setting up ucf (3.0038+nmu1) ... debconf: unable to initialize frontend: Dialog debconf: (TERM is not set, so the dialog frontend is not usable.) debconf: falling back to frontend: Readline Setting up libjpeg-turbo8:amd64 (2.0.3-0ubuntu1.20.04.1) ... Setting up libxml-commons-external-java (1.4.01-3) ... Setting up libasound2:amd64 (1.2.2-2.1ubuntu2.5) ... Setting up libxerces2-java (2.12.1-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libdom4j-java (2.1.1-2) ... Setting up fontconfig-config (2.13.1-2ubuntu3) ... Setting up libjdom1-java (1.1.3-2) ... Setting up libavahi-common3:amd64 (0.7-4ubuntu7.1) ... Setting up libnss3:amd64 (2:3.49.1-1ubuntu1.6) ... Setting up libxom-java (1.2.10-1) ... Setting up libfreetype6:amd64 (2.10.1-2ubuntu0.1) ... Setting up libharfbuzz0b:amd64 (2.6.4-1ubuntu4) ... Setting up libfontconfig1:amd64 (2.13.1-2ubuntu3) ... Setting up libavahi-client3:amd64 (0.7-4ubuntu7.1) ... Setting up libsaxonhe-java (9.9.1.5+dfsg-1) ... Setting up libcups2:amd64 (2.3.1-9ubuntu1.1) ... Setting up ca-certificates-java (20190405ubuntu1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:Amazon_Root_CA_1.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:ACCVRAIZ1.pem Adding debian:Certigna_Root_CA.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:GTS_Root_R4.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:Izenpe.com.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:GTS_Root_R3.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:Certigna.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:GTS_Root_R2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:TrustCor_ECA-1.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:ISRG_Root_X1.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:SecureTrust_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:EC-ACC.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:AffirmTrust_Premium.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:AffirmTrust_Networking.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:SecureSign_RootCA11.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Secure_Global_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem done. Setting up default-jre-headless (2:1.11-72) ... Processing triggers for libc-bin (2.31-0ubuntu9.2) ... Processing triggers for ca-certificates (20210119~20.04.2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Setting up openjdk-11-jre-headless:amd64 (11.0.11+9-0ubuntu2~20.04) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode './local.pdbg' -> '/opt/cp2k-toolchain/install/arch/local.pdbg' './local.psmp' -> '/opt/cp2k-toolchain/install/arch/local.psmp' './local.sdbg' -> '/opt/cp2k-toolchain/install/arch/local.sdbg' './local.ssmp' -> '/opt/cp2k-toolchain/install/arch/local.ssmp' './local_coverage.pdbg' -> '/opt/cp2k-toolchain/install/arch/local_coverage.pdbg' './local_static.psmp' -> '/opt/cp2k-toolchain/install/arch/local_static.psmp' './local_static.ssmp' -> '/opt/cp2k-toolchain/install/arch/local_static.ssmp' './local_warn.psmp' -> '/opt/cp2k-toolchain/install/arch/local_warn.psmp' Warming cache by trying to compile... done. Removing intermediate container f5b2f09c9b7a ---> ee30142cac97 Step 8/9 : COPY ./scripts/ci_entrypoint.sh ./scripts/test_manual.sh ./ ---> a7b9af76e042 Step 9/9 : CMD ["./ci_entrypoint.sh", "./test_manual.sh"] ---> Running in dc5c64357f7f Removing intermediate container dc5c64357f7f ---> c11e46f3e198 Successfully built c11e46f3e198 Successfully tagged gcr.io/cp2k-org-project/img_cp2k-manual-arch-b51:gittree-a7c81b9-buildargs-2883afb Pushing image cp2k-manual... done. #################### Running Image cp2k-manual #################### ========== Fetching Git Commit ========== CommitSHA: 67dc77c1ebf6c3236617eea57c60062de8a5af0c CommitTime: 2021-12-16 09:35:13 +0100 CommitAuthor: Alfio Lazzaro CommitSubject: Avoid ELPA for small benchmarks (#1811) ========== Running Test ========== ========== Compiling CP2K ========== Compiling cp2k... done. ========== Generating Manual ========== CP2K version 9.0 (Development Version) Source code revision git:67dc77c cp2kflags: omp libint fftw3 libxc pexsi elpa parallel mpi3 scalapack cosma quip smm_dnn smm xsmm plumed2 spglib sirius libvori libbqb compiler: GCC version 11.2.0 compiler options: -cpp -I /opt/cp2k-toolchain/install/mpich-3.3.2/include -I /opt/cp2k -toolchain/install/openblas-0.3.18/include -I /opt/cp2k-toolchain/in stall/fftw-3.3.10/include -I /opt/cp2k-toolchain/install/libint-v2.6 .0-cp2k-lmax-5/include -I /opt/cp2k-toolchain/install/libxc-5.1.7/in clude -I /opt/cp2k-toolchain/install/libxsmm-1.17/include -I /opt/cp 2k-toolchain/install/COSMA-2.5.1/include -I /opt/cp2k-toolchain/inst all/elpa-2021.11.001.rc1/cpu/include/elpa_openmp-2021.11.001.rc1/mod ules -I /opt/cp2k-toolchain/install/elpa-2021.11.001.rc1/cpu/include /elpa_openmp-2021.11.001.rc1/elpa -I /opt/cp2k-toolchain/install/sco tch-6.0.0/include -I /opt/cp2k-toolchain/install/superlu_dist-6.1.0/ include -I /opt/cp2k-toolchain/install/pexsi-1.2.0/include -I /opt/c p2k-toolchain/install/quip-b4336484fb65b0e73211a8f920ae4361c7c353fd/ include -I /opt/cp2k-toolchain/install/gsl-2.7/include -I /opt/cp2k- toolchain/install/hdf5-1.12.0/include -I /opt/cp2k-toolchain/install /libvdwxc-0.4.0/include -I /opt/cp2k-toolchain/install/spglib-1.16.2 /include -I /opt/cp2k-toolchain/install/SpFFT-1.0.5/include -I /opt/ cp2k-toolchain/install/SpLA-1.5.2/include -I /opt/cp2k-toolchain/ins tall/sirius-7.3.0/include -I /workspace/cp2k/src/start/ -I /workspac e/cp2k/obj/local/psmp/exts/dbcsr -I /opt/cp2k-toolchain/install/mpic h-3.3.2/include -I /opt/cp2k-toolchain/install/mpich-3.3.2/include - imultiarch x86_64-linux-gnu -D_REENTRANT -D __LIBXSMM -D __parallel -D __FFTW3 -D __LIBINT -D __LIBXC -D __HAS_smm_dnn -D __SCALAPACK -D __COSMA -D __ELPA -D __LIBPEXSI -D __QUIP -D __GSL -D __PLUMED2 -D __HDF5 -D __LIBVDWXC -D __SPGLIB -D __LIBVORI -D __SPFFT -D __SPLA - D __SIRIUS -D __COMPILE_ARCH="local" -D __COMPILE_DATE="Thu Dec 16 1 1:20:48 UTC 2021" -D __COMPILE_HOST="eabbcefec810" -D __COMPILE_REVI SION="git:67dc77c" -D __DATA_DIR="/workspace/cp2k/data" -D __SHORT_F ILE__="start/cp2k.F" -march=skylake-avx512 -mmmx -mpopcnt -msse -mss e2 -msse3 -mssse3 -msse4.1 -msse4.2 -mavx -mavx2 -mno-sse4a -mno-fma 4 -mno-xop -mfma -mavx512f -mbmi -mbmi2 -maes -mpclmul -mavx512vl -m avx512bw -mavx512dq -mavx512cd -mno-avx512er -mno-avx512pf -mno-avx5 12vbmi -mno-avx512ifma -mno-avx5124vnniw -mno-avx5124fmaps -mno-avx5 12vpopcntdq -mno-avx512vbmi2 -mno-gfni -mno-vpclmulqdq -mno-avx512vn ni -mno-avx512bitalg -mno-avx512bf16 -mno-avx512vp2intersect -mno-3d now -madx -mabm -mno-cldemote -mclflushopt -mclwb -mno-clzero -mcx16 -mno-enqcmd -mf16c -mfsgsbase -mfxsr -mhle -msahf -mno-lwp -mlzcnt -mmovbe -mno-movdir64b -mno-movdiri -mno-mwaitx -mno-pconfig -mno-pk u -mno-prefetchwt1 -mprfchw -mno-ptwrite -mno-rdpid -mrdrnd -mrdseed -mrtm -mno-serialize -mno-sgx -mno-sha -mno-shstk -mno-tbm -mno-tsx ldtrk -mno-vaes -mno-waitpkg -mno-wbnoinvd -mxsave -mxsavec -mxsaveo pt -mxsaves -mno-amx-tile -mno-amx-int8 -mno-amx-bf16 -mno-uintr -mn o-hreset -mno-kl -mno-widekl -mno-avxvnni --param=l1-cache-size=32 - -param=l1-cache-line-size=64 --param=l2-cache-size=39424 -mtune=skyl ake-avx512 -g -g -O2 -O3 -Werror=aliasing -Werror=ampersand -Werror= c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werr or=line-truncation -Werror=tabs -Werror=target-lifetime -Werror=unde rflow -Werror=unused-but-set-variable -Werror=unused-variable -Werro r=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Wno-may be-uninitialized -Wuninitialized -Wuse-without-only -std=f2008 -fall ow-argument-mismatch -fno-omit-frame-pointer -funroll-loops -fopenmp -fbacktrace -ffree-form -fimplicit-none -fpre-include=/usr/include/ finclude/math-vector-fortran.h Summary: Manual generation works fine. Status: OK Uploading artifacts... done EndDate: 2021-12-16 11:21:29+00:00