StartDate: 2021-01-24 16:53:53+00:00 CpuId: 16x Intel Core i7-5000 Extreme Edition (Haswell R2) / Xeon E5-x600 / Xeon E5-4800 / Xeon E5-8800 v3 (Haswell-EP), 22nm CommitSHA: 8a5b25a29b073c2e9c89190871898c2374d47822 CommitTime: 2021-01-24 17:44:53 +0100 CommitAuthor: Ole Schütt CommitSubject: Toolchain: Split into stages to simplify Dockerfile Trying to pull image cp2k-toolchain-mpich... success :-) Trying to pull image cp2k-manual... image not found. #################### Building Image cp2k-manual #################### Dockerfile: /tools/docker/Dockerfile.test_manual Build-Args: TOOLCHAIN=gcr.io/cp2k-org-project/img_cp2k-toolchain-mpich-arch-132:gittree-7e31b42-buildargs-68b329d Sending build context to Docker daemon 71.68kB Step 1/9 : ARG TOOLCHAIN=cp2k/toolchain:latest Step 2/9 : FROM ${TOOLCHAIN} ---> bd1764c636fc Step 3/9 : WORKDIR /workspace ---> Running in 4e8efdc624df Removing intermediate container 4e8efdc624df ---> 10da5b2a3fc8 Step 4/9 : COPY ./scripts/install_basics.sh . ---> d4d92496fb9c Step 5/9 : RUN ./install_basics.sh ---> Running in 156a348610b6 Installing Ubuntu packages... debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpopt0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15982 files and directories currently installed.) Preparing to unpack .../libpopt0_1.16-14_amd64.deb ... Unpacking libpopt0:amd64 (1.16-14) ... Selecting previously unselected package rsync. Preparing to unpack .../rsync_3.1.3-8_amd64.deb ... Unpacking rsync (3.1.3-8) ... Setting up libpopt0:amd64 (1.16-14) ... Setting up rsync (3.1.3-8) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Processing triggers for libc-bin (2.31-0ubuntu9.1) ... done. Cloning cp2k repository... done. Removing intermediate container 156a348610b6 ---> 3ba90a0476be Step 6/9 : COPY ./scripts/install_manual.sh . ---> 88ab69be6651 Step 7/9 : RUN ./install_manual.sh ---> Running in d1e6ea8610d5 debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16018 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../01-libdbus-1-3_1.12.16-2ubuntu2.1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.16-2ubuntu2.1) ... Selecting previously unselected package ucf. Preparing to unpack .../02-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../03-libpng16-16_1.6.37-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../04-libxau6_1%3a1.0.9-0ubuntu1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-0ubuntu1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../05-libxdmcp6_1%3a1.1.3-0ubuntu1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.3-0ubuntu1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../06-libxcb1_1.14-2_amd64.deb ... Unpacking libxcb1:amd64 (1.14-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../07-libx11-data_2%3a1.6.9-2ubuntu1.1_all.deb ... Unpacking libx11-data (2:1.6.9-2ubuntu1.1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../08-libx11-6_2%3a1.6.9-2ubuntu1.1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.9-2ubuntu1.1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../09-libxext6_2%3a1.3.4-0ubuntu1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-0ubuntu1) ... Selecting previously unselected package java-common. Preparing to unpack .../10-java-common_0.72_all.deb ... Unpacking java-common (0.72) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../11-libavahi-common-data_0.7-4ubuntu7_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.7-4ubuntu7) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../12-libavahi-common3_0.7-4ubuntu7_amd64.deb ... Unpacking libavahi-common3:amd64 (0.7-4ubuntu7) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../13-libavahi-client3_0.7-4ubuntu7_amd64.deb ... Unpacking libavahi-client3:amd64 (0.7-4ubuntu7) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../14-libcups2_2.3.1-9ubuntu1.1_amd64.deb ... Unpacking libcups2:amd64 (2.3.1-9ubuntu1.1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../15-liblcms2-2_2.9-4_amd64.deb ... Unpacking liblcms2-2:amd64 (2.9-4) ... Selecting previously unselected package libjpeg-turbo8:amd64. Preparing to unpack .../16-libjpeg-turbo8_2.0.3-0ubuntu1.20.04.1_amd64.deb ... Unpacking libjpeg-turbo8:amd64 (2.0.3-0ubuntu1.20.04.1) ... Selecting previously unselected package libjpeg8:amd64. Preparing to unpack .../17-libjpeg8_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../18-libfreetype6_2.10.1-2ubuntu0.1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.1-2ubuntu0.1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../19-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../20-fontconfig-config_2.13.1-2ubuntu3_all.deb ... Unpacking fontconfig-config (2.13.1-2ubuntu3) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../21-libfontconfig1_2.13.1-2ubuntu3_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-2ubuntu3) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../22-libnspr4_2%3a4.25-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.25-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../23-libnss3_2%3a3.49.1-1ubuntu1.5_amd64.deb ... Unpacking libnss3:amd64 (2:3.49.1-1ubuntu1.5) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../24-libasound2-data_1.2.2-2.1ubuntu2.3_all.deb ... Unpacking libasound2-data (1.2.2-2.1ubuntu2.3) ... Selecting previously unselected package libasound2:amd64. Preparing to unpack .../25-libasound2_1.2.2-2.1ubuntu2.3_amd64.deb ... Unpacking libasound2:amd64 (1.2.2-2.1ubuntu2.3) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../26-libpcsclite1_1.8.26-3_amd64.deb ... Unpacking libpcsclite1:amd64 (1.8.26-3) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../27-libxi6_2%3a1.7.10-0ubuntu1_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.10-0ubuntu1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../28-libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../29-x11-common_1%3a7.7+19ubuntu14_all.deb ... dpkg-query: no packages found matching nux-tools Unpacking x11-common (1:7.7+19ubuntu14) ... Selecting previously unselected package libxtst6:amd64. Preparing to unpack .../30-libxtst6_2%3a1.2.3-1_amd64.deb ... Unpacking libxtst6:amd64 (2:1.2.3-1) ... Selecting previously unselected package openjdk-11-jre-headless:amd64. Preparing to unpack .../31-openjdk-11-jre-headless_11.0.9.1+1-0ubuntu1~20.04_amd64.deb ... Unpacking openjdk-11-jre-headless:amd64 (11.0.9.1+1-0ubuntu1~20.04) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../32-default-jre-headless_2%3a1.11-72_amd64.deb ... Unpacking default-jre-headless (2:1.11-72) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../33-ca-certificates-java_20190405ubuntu1_all.deb ... Unpacking ca-certificates-java (20190405ubuntu1) ... Selecting previously unselected package libjaxen-java. Preparing to unpack .../34-libjaxen-java_1.1.6-4_all.deb ... Unpacking libjaxen-java (1.1.6-4) ... Selecting previously unselected package libdom4j-java. Preparing to unpack .../35-libdom4j-java_2.1.1-2_all.deb ... Unpacking libdom4j-java (2.1.1-2) ... Selecting previously unselected package libicu4j-java. Preparing to unpack .../36-libicu4j-java_62.1-2_all.deb ... Unpacking libicu4j-java (62.1-2) ... Selecting previously unselected package libjetbrains-annotations-java. Preparing to unpack .../37-libjetbrains-annotations-java_19.0.0-1_all.deb ... Unpacking libjetbrains-annotations-java (19.0.0-1) ... Selecting previously unselected package libintellij-annotations-java. Preparing to unpack .../38-libintellij-annotations-java_19.0.0-1_all.deb ... Unpacking libintellij-annotations-java (19.0.0-1) ... Selecting previously unselected package libjdom1-java. Preparing to unpack .../39-libjdom1-java_1.1.3-2_all.deb ... Unpacking libjdom1-java (1.1.3-2) ... Selecting previously unselected package libxml-commons-resolver1.1-java. Preparing to unpack .../40-libxml-commons-resolver1.1-java_1.2-9_all.deb ... Unpacking libxml-commons-resolver1.1-java (1.2-9) ... Selecting previously unselected package libxml-commons-external-java. Preparing to unpack .../41-libxml-commons-external-java_1.4.01-3_all.deb ... Unpacking libxml-commons-external-java (1.4.01-3) ... Selecting previously unselected package libxerces2-java. Preparing to unpack .../42-libxerces2-java_2.12.1-1_all.deb ... Unpacking libxerces2-java (2.12.1-1) ... Selecting previously unselected package libxom-java. Preparing to unpack .../43-libxom-java_1.2.10-1_all.deb ... Unpacking libxom-java (1.2.10-1) ... Selecting previously unselected package libsaxonhe-java. Preparing to unpack .../44-libsaxonhe-java_9.9.1.5+dfsg-1_all.deb ... Unpacking libsaxonhe-java (9.9.1.5+dfsg-1) ... Setting up liblcms2-2:amd64 (2.9-4) ... Setting up libjetbrains-annotations-java (19.0.0-1) ... Setting up libxau6:amd64 (1:1.0.9-0ubuntu1) ... Setting up libicu4j-java (62.1-2) ... Setting up java-common (0.72) ... Setting up x11-common (1:7.7+19ubuntu14) ... debconf: unable to initialize frontend: Dialog debconf: (TERM is not set, so the dialog frontend is not usable.) debconf: falling back to frontend: Readline update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libintellij-annotations-java (19.0.0-1) ... Setting up libasound2-data (1.2.2-2.1ubuntu2.3) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libx11-data (2:1.6.9-2ubuntu1.1) ... Setting up libnspr4:amd64 (2:4.25-1) ... Setting up libavahi-common-data:amd64 (0.7-4ubuntu7) ... Setting up libdbus-1-3:amd64 (1.12.16-2ubuntu2.1) ... Setting up libpng16-16:amd64 (1.6.37-2) ... Setting up libxml-commons-resolver1.1-java (1.2-9) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpcsclite1:amd64 (1.8.26-3) ... Setting up ucf (3.0038+nmu1) ... debconf: unable to initialize frontend: Dialog debconf: (TERM is not set, so the dialog frontend is not usable.) debconf: falling back to frontend: Readline Setting up libjpeg-turbo8:amd64 (2.0.3-0ubuntu1.20.04.1) ... Setting up libxml-commons-external-java (1.4.01-3) ... Setting up libasound2:amd64 (1.2.2-2.1ubuntu2.3) ... Setting up libxerces2-java (2.12.1-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libdom4j-java (2.1.1-2) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu1) ... Setting up libxcb1:amd64 (1.14-2) ... Setting up fontconfig-config (2.13.1-2ubuntu3) ... Setting up libjdom1-java (1.1.3-2) ... Setting up libavahi-common3:amd64 (0.7-4ubuntu7) ... Setting up libnss3:amd64 (2:3.49.1-1ubuntu1.5) ... Setting up libxom-java (1.2.10-1) ... Setting up libfreetype6:amd64 (2.10.1-2ubuntu0.1) ... Setting up libx11-6:amd64 (2:1.6.9-2ubuntu1.1) ... Setting up libfontconfig1:amd64 (2.13.1-2ubuntu3) ... Setting up libavahi-client3:amd64 (0.7-4ubuntu7) ... Setting up libsaxonhe-java (9.9.1.5+dfsg-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu1) ... Setting up libcups2:amd64 (2.3.1-9ubuntu1.1) ... Setting up libxi6:amd64 (2:1.7.10-0ubuntu1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up default-jre-headless (2:1.11-72) ... Setting up openjdk-11-jre-headless:amd64 (11.0.9.1+1-0ubuntu1~20.04) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ca-certificates-java (20190405ubuntu1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:ISRG_Root_X1.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certigna.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:GTS_Root_R4.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Certigna_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:EC-ACC.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Izenpe.com.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:ACCVRAIZ1.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GTS_Root_R2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:GTS_Root_R1.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:DST_Root_CA_X3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:Secure_Global_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:SecureTrust_CA.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:AffirmTrust_Networking.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:AffirmTrust_Premium.pem Adding debian:GTS_Root_R3.pem done. Processing triggers for libc-bin (2.31-0ubuntu9.1) ... Processing triggers for ca-certificates (20201027ubuntu0.20.04.1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. './local.pdbg' -> '/opt/cp2k-toolchain/install/arch/local.pdbg' './local.psmp' -> '/opt/cp2k-toolchain/install/arch/local.psmp' './local.sdbg' -> '/opt/cp2k-toolchain/install/arch/local.sdbg' './local.ssmp' -> '/opt/cp2k-toolchain/install/arch/local.ssmp' './local_coverage.pdbg' -> '/opt/cp2k-toolchain/install/arch/local_coverage.pdbg' './local_valgrind.psmp' -> '/opt/cp2k-toolchain/install/arch/local_valgrind.psmp' './local_valgrind.ssmp' -> '/opt/cp2k-toolchain/install/arch/local_valgrind.ssmp' './local_warn.psmp' -> '/opt/cp2k-toolchain/install/arch/local_warn.psmp' Warming cache by trying to compile... done. Removing intermediate container d1e6ea8610d5 ---> 92cb0916615b Step 8/9 : COPY ./scripts/ci_entrypoint.sh ./scripts/test_manual.sh ./ ---> 4bfaf35c87f8 Step 9/9 : CMD ["./ci_entrypoint.sh", "./test_manual.sh"] ---> Running in 4b7bb76595e6 Removing intermediate container 4b7bb76595e6 ---> 451d2ac5856a Successfully built 451d2ac5856a Successfully tagged gcr.io/cp2k-org-project/img_cp2k-manual-arch-132:gittree-e0dcf2a-buildargs-39aed77 Pushing image cp2k-manual... done. #################### Running Image cp2k-manual #################### ========== Fetching Git Commit ========== CommitSHA: 8a5b25a29b073c2e9c89190871898c2374d47822 CommitTime: 2021-01-24 17:44:53 +0100 CommitAuthor: Ole Schütt CommitSubject: Toolchain: Split into stages to simplify Dockerfile ========== Running Test ========== ========== Compiling CP2K ========== Compiling cp2k... done. ========== Generating Manual ========== CP2K version 9.0 (Development Version) Source code revision git:8a5b25a cp2kflags: omp libint fftw3 libxc pexsi elpa parallel mpi3 scalapack quip smm_dnn smm xsmm plumed2 spglib sirius libvori libbqb compiler: GCC version 10.2.0 compiler options: -cpp -I /opt/cp2k-toolchain/install/mpich-3.3.2/include -I /opt/cp2k -toolchain/install/openblas-0.3.10/include -I /opt/cp2k-toolchain/in stall/fftw-3.3.8/include -I /opt/cp2k-toolchain/install/libint-v2.6. 0-cp2k-lmax-5/include -I /opt/cp2k-toolchain/install/libxc-4.3.4/inc lude -I /opt/cp2k-toolchain/install/libxsmm-1.16.1/include -I /opt/c p2k-toolchain/install/cosma-2.2.0/include -I /opt/cp2k-toolchain/ins tall/elpa-2020.05.001/include/elpa_openmp-2020.05.001/modules -I /op t/cp2k-toolchain/install/elpa-2020.05.001/include/elpa_openmp-2020.0 5.001/elpa -I /opt/cp2k-toolchain/install/scotch-6.0.0/include -I /o pt/cp2k-toolchain/install/superlu_dist-6.1.0/include -I /opt/cp2k-to olchain/install/pexsi-1.2.0/include -I /opt/cp2k-toolchain/install/q uip-1ff93b3400b83e804f0f2e857e70c5e4133d9705/include -I /opt/cp2k-to olchain/install/gsl-2.6/include -I /opt/cp2k-toolchain/install/hdf5- 1.12.0/include -I /opt/cp2k-toolchain/install/libvdwxc-0.4.0/include -I /opt/cp2k-toolchain/install/spglib-1.16.0/include -I /opt/cp2k-t oolchain/install/SpFFT-0.9.13/include -I /opt/cp2k-toolchain/install /sirius-7.0.0/include -I /workspace/cp2k/src/start/ -I /workspace/cp 2k/obj/local/psmp/exts/dbcsr -I /opt/cp2k-toolchain/install/mpich-3. 3.2/include -I /opt/cp2k-toolchain/install/mpich-3.3.2/include -imul tiarch x86_64-linux-gnu -D_REENTRANT -D __LIBXSMM -D __parallel -D _ _FFTW3 -D __LIBINT -D __LIBXC -D __HAS_smm_dnn -D __SCALAPACK -D __C OSMA -D __ELPA -D __LIBPEXSI -D __QUIP -D __GSL -D __PLUMED2 -D __HD F5 -D __LIBVDWXC -D __SPGLIB -D __LIBVORI -D __SPFFT -D __SIRIUS -D __COMPILE_ARCH="local" -D __COMPILE_DATE="Sun Jan 24 17:19:57 UTC 20 21" -D __COMPILE_HOST="d96614bae9bf" -D __COMPILE_REVISION="git:8a5b 25a" -D __DATA_DIR="/workspace/cp2k/data" -D __SHORT_FILE__="start/c p2k.F" -march=haswell -mmmx -mno-3dnow -msse -msse2 -msse3 -mssse3 - mno-sse4a -mcx16 -msahf -mmovbe -maes -mno-sha -mpclmul -mpopcnt -ma bm -mno-lwp -mfma -mno-fma4 -mno-xop -mbmi -mno-sgx -mbmi2 -mno-pcon fig -mno-wbnoinvd -mno-tbm -mavx -mavx2 -msse4.2 -msse4.1 -mlzcnt -m no-rtm -mno-hle -mrdrnd -mf16c -mfsgsbase -mno-rdseed -mno-prfchw -m no-adx -mfxsr -mxsave -mxsaveopt -mno-avx512f -mno-avx512er -mno-avx 512cd -mno-avx512pf -mno-prefetchwt1 -mno-clflushopt -mno-xsavec -mn o-xsaves -mno-avx512dq -mno-avx512bw -mno-avx512vl -mno-avx512ifma - mno-avx512vbmi -mno-avx5124fmaps -mno-avx5124vnniw -mno-clwb -mno-mw aitx -mno-clzero -mno-pku -mno-rdpid -mno-gfni -mno-shstk -mno-avx51 2vbmi2 -mno-avx512vnni -mno-vaes -mno-vpclmulqdq -mno-avx512bitalg - mno-avx512vpopcntdq -mno-movdiri -mno-movdir64b -mno-waitpkg -mno-cl demote -mno-ptwrite -mno-avx512bf16 -mno-enqcmd -mno-avx512vp2inters ect --param=l1-cache-size=32 --param=l1-cache-line-size=64 --param=l 2-cache-size=46080 -mtune=haswell -g -g -O2 -O3 -Werror=aliasing -We rror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werr or=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=targe t-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror =unused-variable -Werror=unused-dummy-argument -Werror=conversion -W error=zerotrip -Wno-maybe-uninitialized -Wuninitialized -Wuse-withou t-only -std=f2008 -fallow-argument-mismatch -fno-omit-frame-pointer -funroll-loops -fopenmp -fbacktrace -ffree-form -fimplicit-none -fpr e-include=/usr/include/finclude/math-vector-fortran.h Summary: Manual generation works fine. Status: OK Uploading artifacts... done EndDate: 2021-01-24 17:20:35+00:00