StartDate: 2024-04-18 06:05:03+00:00 CpuId: 4x AMD EPYC (3rd Gen) (Milan) [Zen 3], 7nm (SMT disabled) CommitSHA: e7e05ae31075b5074d54de54a38b07459bb3ec78 CommitTime: 2024-04-17 13:23:59 +0200 CommitAuthor: Mia Schambeck CommitSubject: Add option to export GW spectral function only for specific levels #################### Building Image cp2k-precommit #################### Dockerfile: /tools/docker/Dockerfile.test_precommit Build-Path: / Build-Args: GIT_COMMIT_SHA=e7e05ae31075b5074d54de54a38b07459bb3ec78 Build-Cache: Yes Populating docker build cache... done. DEPRECATED: The legacy builder is deprecated and will be removed in a future release. BuildKit is currently disabled; enable it by removing the DOCKER_BUILDKIT=0 environment-variable. Sending build context to Docker daemon 394.2MB Step 1/10 : FROM ubuntu:22.04 22.04: Pulling from library/ubuntu 3c645031de29: Pulling fs layer 3c645031de29: Verifying Checksum 3c645031de29: Download complete 3c645031de29: Pull complete Digest: sha256:1b8d8ff4777f36f19bfe73ee4df61e3a0b789caeff29caa019539ec7c9a57f95 Status: Downloaded newer image for ubuntu:22.04 ---> 7af9ba4f0a47 Step 2/10 : WORKDIR /opt/cp2k-precommit ---> Using cache ---> 9e5f6e5b0cdf Step 3/10 : COPY ./tools/precommit/ /opt/cp2k-precommit/ ---> 2c053c7b03c5 Step 4/10 : RUN ./install_requirements.sh ---> Running in e6c4fdb6747a debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.10-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4393 files and directories currently installed.) Preparing to unpack .../libpython3.10-minimal_3.10.12-1~22.04.3_amd64.deb ... Unpacking libpython3.10-minimal:amd64 (3.10.12-1~22.04.3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.4.7-1ubuntu0.3_amd64.deb ... Unpacking libexpat1:amd64 (2.4.7-1ubuntu0.3) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.12-1~22.04.3_amd64.deb ... Unpacking python3.10-minimal (3.10.12-1~22.04.3) ... Setting up libpython3.10-minimal:amd64 (3.10.12-1~22.04.3) ... Setting up libexpat1:amd64 (2.4.7-1ubuntu0.3) ... Setting up python3.10-minimal (3.10.12-1~22.04.3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4697 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.6-1~22.04_amd64.deb ... Unpacking python3-minimal (3.10.6-1~22.04) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_7.0.0_all.deb ... Unpacking media-types (7.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-2build2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2build2) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.1.2-1_all.deb ... Unpacking readline-common (8.1.2-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../4-libreadline8_8.1.2-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1.2-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../5-libsqlite3-0_3.37.2-2ubuntu0.3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.37.2-2ubuntu0.3) ... Selecting previously unselected package libpython3.10-stdlib:amd64. Preparing to unpack .../6-libpython3.10-stdlib_3.10.12-1~22.04.3_amd64.deb ... Unpacking libpython3.10-stdlib:amd64 (3.10.12-1~22.04.3) ... Selecting previously unselected package python3.10. Preparing to unpack .../7-python3.10_3.10.12-1~22.04.3_amd64.deb ... Unpacking python3.10 (3.10.12-1~22.04.3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.10.6-1~22.04_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.10.6-1~22.04) ... Setting up python3-minimal (3.10.6-1~22.04) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5127 files and directories currently installed.) Preparing to unpack .../00-python3_3.10.6-1~22.04_amd64.deb ... Unpacking python3 (3.10.6-1~22.04) ... Selecting previously unselected package perl-modules-5.34. Preparing to unpack .../01-perl-modules-5.34_5.34.0-3ubuntu1.3_all.deb ... Unpacking perl-modules-5.34 (5.34.0-3ubuntu1.3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../02-libgdbm6_1.23-1_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-1) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../03-libgdbm-compat4_1.23-1_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.23-1) ... Selecting previously unselected package libperl5.34:amd64. Preparing to unpack .../04-libperl5.34_5.34.0-3ubuntu1.3_amd64.deb ... Unpacking libperl5.34:amd64 (5.34.0-3ubuntu1.3) ... Selecting previously unselected package perl. Preparing to unpack .../05-perl_5.34.0-3ubuntu1.3_amd64.deb ... Unpacking perl (5.34.0-3ubuntu1.3) ... Selecting previously unselected package openssl. Preparing to unpack .../06-openssl_3.0.2-0ubuntu1.15_amd64.deb ... Unpacking openssl (3.0.2-0ubuntu1.15) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../07-ca-certificates_20230311ubuntu0.22.04.1_all.deb ... Unpacking ca-certificates (20230311ubuntu0.22.04.1) ... Selecting previously unselected package less. Preparing to unpack .../08-less_590-1ubuntu0.22.04.2_amd64.deb ... Unpacking less (590-1ubuntu0.22.04.2) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../09-libmd0_1.0.4-1build1_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-1build1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../10-libbsd0_0.11.5-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.5-1) ... Selecting previously unselected package libicu70:amd64. Preparing to unpack .../11-libicu70_70.1-2_amd64.deb ... Unpacking libicu70:amd64 (70.1-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../12-libxml2_2.9.13+dfsg-1ubuntu0.4_amd64.deb ... Unpacking libxml2:amd64 (2.9.13+dfsg-1ubuntu0.4) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../13-python3-pkg-resources_59.6.0-1.2ubuntu0.22.04.1_all.deb ... Unpacking python3-pkg-resources (59.6.0-1.2ubuntu0.22.04.1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../14-libedit2_3.1-20210910-1build1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20210910-1build1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../15-libnghttp2-14_1.43.0-1ubuntu0.1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1ubuntu0.1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../16-libpsl5_0.21.0-1.2build2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2build2) ... Selecting previously unselected package nano. Preparing to unpack .../17-nano_6.2-1_amd64.deb ... Unpacking nano (6.2-1) ... Selecting previously unselected package wget. Preparing to unpack .../18-wget_1.21.2-2ubuntu1_amd64.deb ... Unpacking wget (1.21.2-2ubuntu1) ... Selecting previously unselected package libllvm14:amd64. Preparing to unpack .../19-libllvm14_1%3a14.0.0-1ubuntu1.1_amd64.deb ... Unpacking libllvm14:amd64 (1:14.0.0-1ubuntu1.1) ... Selecting previously unselected package libclang-cpp14. Preparing to unpack .../20-libclang-cpp14_1%3a14.0.0-1ubuntu1.1_amd64.deb ... Unpacking libclang-cpp14 (1:14.0.0-1ubuntu1.1) ... Selecting previously unselected package clang-format-14. Preparing to unpack .../21-clang-format-14_1%3a14.0.0-1ubuntu1.1_amd64.deb ... Unpacking clang-format-14 (1:14.0.0-1ubuntu1.1) ... Selecting previously unselected package clang-format:amd64. Preparing to unpack .../22-clang-format_1%3a14.0-55~exp2_amd64.deb ... Unpacking clang-format:amd64 (1:14.0-55~exp2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../23-libbrotli1_1.0.9-2build6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2build6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../24-libsasl2-modules-db_2.1.27+dfsg2-3ubuntu1.2_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg2-3ubuntu1.2) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../25-libsasl2-2_2.1.27+dfsg2-3ubuntu1.2_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg2-3ubuntu1.2) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../26-libldap-2.5-0_2.5.17+dfsg-0ubuntu0.22.04.1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.17+dfsg-0ubuntu0.22.04.1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../27-librtmp1_2.4+20151223.gitfa8646d.1-2build4_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build4) ... Selecting previously unselected package libssh-4:amd64. Preparing to unpack .../28-libssh-4_0.9.6-2ubuntu0.22.04.3_amd64.deb ... Unpacking libssh-4:amd64 (0.9.6-2ubuntu0.22.04.3) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../29-libcurl3-gnutls_7.81.0-1ubuntu1.16_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.81.0-1ubuntu1.16) ... Selecting previously unselected package liberror-perl. Preparing to unpack .../30-liberror-perl_0.17029-1_all.deb ... Unpacking liberror-perl (0.17029-1) ... Selecting previously unselected package git-man. Preparing to unpack .../31-git-man_1%3a2.34.1-1ubuntu1.10_all.deb ... Unpacking git-man (1:2.34.1-1ubuntu1.10) ... Selecting previously unselected package git. Preparing to unpack .../32-git_1%3a2.34.1-1ubuntu1.10_amd64.deb ... Unpacking git (1:2.34.1-1ubuntu1.10) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../33-python3-lib2to3_3.10.8-1~22.04_all.deb ... Unpacking python3-lib2to3 (3.10.8-1~22.04) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../34-python3-distutils_3.10.8-1~22.04_all.deb ... Unpacking python3-distutils (3.10.8-1~22.04) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../35-python3-setuptools_59.6.0-1.2ubuntu0.22.04.1_all.deb ... Unpacking python3-setuptools (59.6.0-1.2ubuntu0.22.04.1) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../36-python3-wheel_0.37.1-2ubuntu0.22.04.1_all.deb ... Unpacking python3-wheel (0.37.1-2ubuntu0.22.04.1) ... Selecting previously unselected package python3-pip. Preparing to unpack .../37-python3-pip_22.0.2+dfsg-1ubuntu0.4_all.deb ... Unpacking python3-pip (22.0.2+dfsg-1ubuntu0.4) ... Selecting previously unselected package python3-pip-whl. Preparing to unpack .../38-python3-pip-whl_22.0.2+dfsg-1ubuntu0.4_all.deb ... Unpacking python3-pip-whl (22.0.2+dfsg-1ubuntu0.4) ... Selecting previously unselected package python3-setuptools-whl. Preparing to unpack .../39-python3-setuptools-whl_59.6.0-1.2ubuntu0.22.04.1_all.deb ... Unpacking python3-setuptools-whl (59.6.0-1.2ubuntu0.22.04.1) ... Selecting previously unselected package python3.10-venv. Preparing to unpack .../40-python3.10-venv_3.10.12-1~22.04.3_amd64.deb ... Unpacking python3.10-venv (3.10.12-1~22.04.3) ... Selecting previously unselected package python3-venv. Preparing to unpack .../41-python3-venv_3.10.6-1~22.04_amd64.deb ... Unpacking python3-venv (3.10.6-1~22.04) ... Selecting previously unselected package shellcheck. Preparing to unpack .../42-shellcheck_0.8.0-2_amd64.deb ... Unpacking shellcheck (0.8.0-2) ... Setting up media-types (7.0.0) ... Setting up python3-setuptools-whl (59.6.0-1.2ubuntu0.22.04.1) ... Setting up libpsl5:amd64 (0.21.0-1.2build2) ... Setting up wget (1.21.2-2ubuntu1) ... Setting up libbrotli1:amd64 (1.0.9-2build6) ... Setting up libsqlite3-0:amd64 (3.37.2-2ubuntu0.3) ... Setting up libnghttp2-14:amd64 (1.43.0-1ubuntu0.1) ... Setting up less (590-1ubuntu0.22.04.2) ... Setting up perl-modules-5.34 (5.34.0-3ubuntu1.3) ... Setting up shellcheck (0.8.0-2) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg2-3ubuntu1.2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg2-3ubuntu1.2) ... Setting up libssh-4:amd64 (0.9.6-2ubuntu0.22.04.3) ... Setting up nano (6.2-1) ... update-alternatives: using /bin/nano to provide /usr/bin/editor (editor) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/editor.1.gz because associated file /usr/share/man/man1/nano.1.gz (of link group editor) doesn't exist update-alternatives: using /bin/nano to provide /usr/bin/pico (pico) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/pico.1.gz because associated file /usr/share/man/man1/nano.1.gz (of link group pico) doesn't exist Setting up libmd0:amd64 (1.0.4-1build1) ... Setting up libmpdec3:amd64 (2.5.1-2build2) ... Setting up git-man (1:2.34.1-1ubuntu1.10) ... Setting up openssl (3.0.2-0ubuntu1.15) ... Setting up libbsd0:amd64 (0.11.5-1) ... Setting up readline-common (8.1.2-1) ... Setting up libgdbm6:amd64 (1.23-1) ... Setting up libicu70:amd64 (70.1-2) ... Setting up libedit2:amd64 (3.1-20210910-1build1) ... Setting up libreadline8:amd64 (8.1.2-1) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-0ubuntu0.22.04.1) ... Setting up libpython3.10-stdlib:amd64 (3.10.12-1~22.04.3) ... Setting up ca-certificates (20230311ubuntu0.22.04.1) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libgdbm-compat4:amd64 (1.23-1) ... Setting up libxml2:amd64 (2.9.13+dfsg-1ubuntu0.4) ... Setting up libpython3-stdlib:amd64 (3.10.6-1~22.04) ... Setting up libperl5.34:amd64 (5.34.0-3ubuntu1.3) ... Setting up python3.10 (3.10.12-1~22.04.3) ... Setting up python3-pip-whl (22.0.2+dfsg-1ubuntu0.4) ... Setting up libcurl3-gnutls:amd64 (7.81.0-1ubuntu1.16) ... Setting up python3 (3.10.6-1~22.04) ... Setting up perl (5.34.0-3ubuntu1.3) ... Setting up libllvm14:amd64 (1:14.0.0-1ubuntu1.1) ... Setting up python3-lib2to3 (3.10.8-1~22.04) ... Setting up python3-pkg-resources (59.6.0-1.2ubuntu0.22.04.1) ... Setting up python3-distutils (3.10.8-1~22.04) ... Setting up python3.10-venv (3.10.12-1~22.04.3) ... Setting up python3-setuptools (59.6.0-1.2ubuntu0.22.04.1) ... Setting up python3-wheel (0.37.1-2ubuntu0.22.04.1) ... Setting up liberror-perl (0.17029-1) ... Setting up python3-venv (3.10.6-1~22.04) ... Setting up libclang-cpp14 (1:14.0.0-1ubuntu1.1) ... Setting up git (1:2.34.1-1ubuntu1.10) ... Setting up python3-pip (22.0.2+dfsg-1ubuntu0.4) ... Setting up clang-format-14 (1:14.0.0-1ubuntu1.1) ... Setting up clang-format:amd64 (1:14.0-55~exp2) ... Processing triggers for libc-bin (2.35-0ubuntu3.6) ... Processing triggers for ca-certificates (20230311ubuntu0.22.04.1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. shfmt_v3.2.2_linux_amd64: OK Removing intermediate container e6c4fdb6747a ---> 598669fa7867 Step 5/10 : ENV PATH="/opt/venv/bin:$PATH" ---> Running in 6941fa3a8ffb Removing intermediate container 6941fa3a8ffb ---> 74227c972571 Step 6/10 : WORKDIR /opt/cp2k ---> Running in b2c21571348d Removing intermediate container b2c21571348d ---> 63bea18e5273 Step 7/10 : COPY ./ ./ ---> 48b99f4d2236 Step 8/10 : RUN ./tools/docker/scripts/test_precommit.sh 2>&1 | tee report.log ---> Running in 4ebc95bcd8c9 ========== Starting Precommit Server ========== [2024-04-18 06:06:17 +0000] [9] [INFO] Starting gunicorn 22.0.0 [2024-04-18 06:06:17 +0000] [9] [INFO] Listening at: http://0.0.0.0:8080 (9) [2024-04-18 06:06:17 +0000] [9] [INFO] Using worker: gthread [2024-04-18 06:06:17 +0000] [11] [INFO] Booting worker with pid: 11 [2024-04-18 06:06:17,381] INFO in precommit_server: CP2K Precommit Server is up and running :-) ========== Running Precommit Checks ========== Running precommit checks using 6 workers and server: http://127.0.0.1:8080 Searching for files... [ ] 2 / 7396 files processed [ ] 50 / 7396 files processed [ ] 53 / 7396 files processed [ ] 53 / 7396 files processed [ ] 59 / 7396 files processed [ ] 67 / 7396 files processed [ ] 69 / 7396 files processed [ ] 77 / 7396 files processed [ ] 108 / 7396 files processed [ ] 120 / 7396 files processed [= ] 133 / 7396 files processed [= ] 153 / 7396 files processed [= ] 165 / 7396 files processed [= ] 183 / 7396 files processed [= ] 203 / 7396 files processed [= ] 220 / 7396 files processed [= ] 242 / 7396 files processed [== ] 277 / 7396 files processed [== ] 300 / 7396 files processed [== ] 324 / 7396 files processed [== ] 342 / 7396 files processed [== ] 363 / 7396 files processed [=== ] 388 / 7396 files processed [=== ] 422 / 7396 files processed [=== ] 464 / 7396 files processed [==== ] 499 / 7396 files processed [==== ] 536 / 7396 files processed [==== ] 579 / 7396 files processed [===== ] 621 / 7396 files processed [===== ] 668 / 7396 files processed [===== ] 717 / 7396 files processed [====== ] 757 / 7396 files processed [====== ] 801 / 7396 files processed [====== ] 855 / 7396 files processed [======= ] 921 / 7396 files processed [======== ] 988 / 7396 files processed [======== ] 1065 / 7396 files processed [========= ] 1151 / 7396 files processed [========== ] 1243 / 7396 files processed [========== ] 1342 / 7396 files processed [=========== ] 1459 / 7396 files processed [============= ] 1660 / 7396 files processed [=============== ] 1948 / 7396 files processed [================== ] 2309 / 7396 files processed [====================== ] 2776 / 7396 files processed [=========================== ] 3345 / 7396 files processed [================================ ] 3949 / 7396 files processed [===================================== ] 4565 / 7396 files processed [========================================== ] 5179 / 7396 files processed [=============================================== ] 5796 / 7396 files processed [==================================================== ] 6458 / 7396 files processed [========================================================= ] 7117 / 7396 files processed [============================================================] 7396 / 7396 files processed Summary: Found 7396, skipped 0, checked 7396, and failed 0 files. Status: OK Removing intermediate container 4ebc95bcd8c9 ---> a8177f981450 Step 9/10 : CMD cat $(find ./report.log -mmin +10) | sed '/^Summary:/ s/$/ (cached)/' ---> Running in 2553de50bfca Removing intermediate container 2553de50bfca ---> 5e9be806bcd6 Step 10/10 : ENTRYPOINT [] ---> Running in 7470b524142d Removing intermediate container 7470b524142d ---> 497e39670eee [Warning] One or more build-args [GIT_COMMIT_SHA] were not consumed Successfully built 497e39670eee Successfully tagged us-central1-docker.pkg.dev/cp2k-org-project/cp2kci/img_cp2k-precommit:master Pushing new image... done. #################### Running Image cp2k-precommit #################### EndDate: 2024-04-18 06:15:22+00:00