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exercises:2014_ethz_mmm:nacl_md

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exercise:nacl_md [2014/05/30 12:19] – [Observer NaCl dissociation] oschuettexercise:nacl_md [2014/05/30 13:09] oschuett
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 This can be done in the following way: This can be done in the following way:
   - Load the trajectory with VMD   - Load the trajectory with VMD
-  - Setup the box by typing: ''vmd > pbc set {12.4138  12.4138  12.4138}'' +  - Setup the box through the $g(r)$-menu
-  - Fold back periodic images by typing: ''vmd > pbc wrap''+  - Fold back periodic images by typing: ''pbc wrap -centersel "element Na" -center com -all''
   - Select ''Mouse'' -> ''Label'' -> ''Bonds'' from the menu   - Select ''Mouse'' -> ''Label'' -> ''Bonds'' from the menu
   - Click successively on the Na and the Cl atom   - Click successively on the Na and the Cl atom
exercises/2014_ethz_mmm/nacl_md.txt · Last modified: 2020/08/21 10:15 by 127.0.0.1