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--- exercises:2018_ethz_mmm:index [2018/02/22 14:22] – dpasserone
+++ exercises:2018_ethz_mmm:index [2018/05/25 10:04] – dpasserone
@@ Line 6: / Line 6: @@
   - [[lennard_jones_cluster_2018| 3D 38 Atom Lennard-Jones cluster - optimization ]]
   - [[c2h2_bond_energy_2018|Bond Strength in a molecule]]
-  - [[alanine_dipeptide_2018|Alanine dipeptide: Ramachandran plot]]
-====== m_ bash functions ======
+===== Lecture 2 =====
+  - [[H2O_MD| Molecular dynamics of water ]]
-We have programmed in the virtual machine some useful bash functions. They all start with **m_** and can be called from the command line.
+===== Lecture 3 =====
+  - [[MC2018| Monte Carlo simulations for the estimation of pair interactions ]]
+  - [[KMC2018| Kinetic Monte Carlo simulations for the diffusion of molecules @Ag(111) ]]
+===== Lecture 4 =====
+  - [[BF3| BF3 Hartree Fock calculation and orbitals ]]
+===== Lecture 5 =====
+  - [[Ethanol_2018| Dehydration of ethanol ]]
+===== Lecture 6 =====
+  - [[Adsorption_2018| Adsoprtion of acetylene on PdGa  ]]
+===== Lecture 7 =====
+  - [[Infrared_2018| Infrared spectroscopy with cp2k  ]]
+===== Lecture 8 =====
+  - [[Bands_I_2018| Crystallographic point groups, free electron model  ]]
+===== Lecture 9 =====
+  - [[Bands_II_2018| Bandstructure calculations  ]]
+===== Lecture 10 =====
+  - [[STM_2018| STM and AFM simulations  ]]
+===== Lecture 11 =====
+  - [[RE_2018| Replica Exchange molecular dynamics  ]]
+  - [[QMMM_2018| QM/MM for a slab  ]]
+===== Lecture 12 =====
+  - [[PMF| Potential of mean force  ]]
+<!--  - [[alanine_dipeptide_2018|Alanine dipeptide: Ramachandran plot]]
+-->
+===== note on the Quantum Mobile =====
+Remember that the Quantum Mobile VM is a Linux environment. As such, copy/paste operations are sometimes application-dependent.
+<note tip>
+  * In a browser or other graphical programs: use CTRL+C/CTRL+V
+  * In a terminal: use SHIFT+CTRL+C/SHIFT+CTRL+V
+</note>
+===== m_ bash functions =====
+We have programmed in the virtual machine some useful bash functions. They all start with **m_** and can be called from the command line. To see the usage of one of them, use the -h flag.
 Here the list and usage of all of them:
@@ Line 156: / Line 204: @@
 Usage:
         m_distance x1 y1 z1 x2 y2 z2
-==================================================================
-==================================================================
-m_functions.bash
 ==================================================================