exercises:2018_uzh_cmest:login
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exercises:2018_uzh_cmest:login [2018/09/17 12:52] – external edit 127.0.0.1 | exercises:2018_uzh_cmest:login [2020/08/21 10:15] (current) – external edit 127.0.0.1 | ||
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* on Microsoft Windows: you need to install [[http:// | * on Microsoft Windows: you need to install [[http:// | ||
* a file transfer tool to copy files from/to the server: | * a file transfer tool to copy files from/to the server: | ||
- | * on Linux: put '' | + | * on Linux: put '' |
* on Mac OS X/OSX/macOS Sierra: use [[https:// | * on Mac OS X/OSX/macOS Sierra: use [[https:// | ||
* one Windows: use [[https:// | * one Windows: use [[https:// | ||
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* Connect to Internet (use VPN when not on the UZH network) | * Connect to Internet (use VPN when not on the UZH network) | ||
* Open a terminal (Konsole, xterm or similar) | * Open a terminal (Konsole, xterm or similar) | ||
- | * Connect to the server by entering the command: '' | + | * Connect to the server by entering the command: '' |
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* Connect to Internet (use VPN when not on the UZH network) | * Connect to Internet (use VPN when not on the UZH network) | ||
* Open a X-Windows terminal in the X11 application if you want to run graphical applications on the server, otherwise use the pre-installed // | * Open a X-Windows terminal in the X11 application if you want to run graphical applications on the server, otherwise use the pre-installed // | ||
- | * Connect to the server by entering the command: '' | + | * Connect to the server by entering the command: '' |
==== Login using Windows ==== | ==== Login using Windows ==== | ||
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- Start the application PuTTY from the Windows menu (in the folder PuTTY) | - Start the application PuTTY from the Windows menu (in the folder PuTTY) | ||
- | - Fill in the //Host Name//: '' | + | - Fill in the //Host Name//: '' |
- Set // | - Set // | ||
- | - Type '' | + | - Type '' |
- In the Category tree on the left side, select // | - In the Category tree on the left side, select // | ||
- Select the tab '' | - Select the tab '' | ||
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* Start Xming (optional, only required if you want to run graphical applications on the server) | * Start Xming (optional, only required if you want to run graphical applications on the server) | ||
* Start Putty | * Start Putty | ||
- | * Double click the session '' | + | * Double click the session '' |
* Enter (username and) password as requested | * Enter (username and) password as requested | ||
- | ==== First steps ==== | ||
- | |||
- | <note important> | ||
- | |||
- | < | ||
- | $ passwd | ||
- | </ | ||
- | </ | ||
===== Part II: Loading and running a program ===== | ===== Part II: Loading and running a program ===== | ||
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< | < | ||
- | $ module load cp2k/ | + | $ module load cp2k |
</ | </ | ||
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< | < | ||
- | $ cp2k.sopt --help | + | $ cp2k.popt --help |
</ | </ | ||
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< | < | ||
- | cp2k.sopt [-c|--check] [-e|--echo] [-h|--help] [--html-manual] | + | cp2k.popt [-c|--check] [-e|--echo] [-h|--help] [--html-manual] |
[-i] < | [-i] < | ||
| | ||
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| | ||
- | The easiest way is cp2k.sopt < | + | The easiest way is cp2k.popt < |
The following options can be used: | The following options can be used: | ||
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</ | </ | ||
- | Another program we need for visualization is [[http:// | + | Another program we need for visualization is [[http:// |
- | + | ||
- | Load the respective module (since there is only one version available, the shorthand '' | + | |
- | + | ||
- | < | + | |
- | $ vmd | + | |
- | </ | + | |
- | + | ||
- | Two new windows named '' | + | |
- | + | ||
- | < | + | |
- | Info) VMD for LINUXAMD64, version 1.9.2 (December 29, 2014) | + | |
- | Info) http:// | + | |
- | Info) Email questions and bug reports to vmd@ks.uiuc.edu | + | |
- | Info) Please include | + | |
- | Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual | + | |
- | Info) Molecular Dynamics', | + | |
- | Info) ------------------------------------------------------------- | + | |
- | Info) Multithreading available, 32 CPUs detected. | + | |
- | Info) Free system memory: 256213MB (99%) | + | |
- | Warning) Detected a mismatch between CUDA runtime and GPU driver | + | |
- | Warning) Check to make sure that GPU drivers are up to date. | + | |
- | Info) No CUDA accelerator devices available. | + | |
- | Warning) Detected X11 ' | + | |
- | Warning) try disabling this X server option. | + | |
- | Warning) disable stereoscopic display when ' | + | |
- | libGL error: failed to load driver: swrast | + | |
- | libGL error: Try again with LIBGL_DEBUG=verbose for more details. | + | |
- | Info) OpenGL renderer: GeForce GTX 760 (192-bit)/ | + | |
- | Info) | + | |
- | Info) GLSL rendering mode is NOT available. | + | |
- | Info) | + | |
- | Info) Dynamically loaded 2 plugins in directory: | + | |
- | Info) / | + | |
- | vmd > | + | |
- | </ | + | |
- | + | ||
- | If you only get the output | + | |
- | + | ||
- | < | + | |
- | vmd > quit | + | |
- | </ | + | |
<note tip>The module loading is **not** persistent. You have to reload the modules every time you log back in.</ | <note tip>The module loading is **not** persistent. You have to reload the modules every time you log back in.</ | ||
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< | < | ||
- | $ module initadd cp2k/ | + | $ module initadd cp2k |
</ | </ | ||
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</ | </ | ||
- | Alternatively you can of course simply edit '' | + | Alternatively you can of course simply edit '' |
==== Setup key-based authentication ==== | ==== Setup key-based authentication ==== | ||
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and accept the defaults proposed and do no set a password. | and accept the defaults proposed and do no set a password. | ||
- | Upload the public key **from your local machine** to tcopt3: | + | Upload the public key **from your local machine** to tcopt2: |
< | < | ||
- | $ scp ~/ | + | $ scp ~/ |
</ | </ | ||
- | Now login to '' | + | Now login to '' |
< | < | ||
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< | < | ||
- | $ ssh -i ~/ | + | $ ssh -i ~/ |
</ | </ | ||
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- Restart //PuTTY// | - Restart //PuTTY// | ||
- | - Select the //Session// '' | + | - Select the //Session// '' |
- Select // | - Select // | ||
- Use the // | - Use the // | ||
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< | < | ||
- | Host tcopt3 | + | Host tcopt2 |
- | HostName | + | HostName |
User studentXX | User studentXX | ||
</ | </ | ||
- | after which you will be able to connect to '' | + | after which you will be able to connect to '' |
< | < | ||
- | $ ssh tcopt3 | + | $ ssh tcopt2 |
</ | </ | ||
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< | < | ||
- | Host tcopt3 | + | Host tcopt2 |
- | HostName | + | HostName |
User studentXX | User studentXX | ||
IdentityFile ~/ | IdentityFile ~/ |
exercises/2018_uzh_cmest/login.1537188763.txt.gz · Last modified: 2020/08/21 10:14 (external edit)