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        <title>CP2K Open Source Molecular Dynamics  - tools</title>
        <description></description>
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       <dc:date>2026-05-04T09:24:55+00:00</dc:date>
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        <title>CP2K Open Source Molecular Dynamics </title>
        <link>https://www.cp2k.org/</link>
        <url>https://www.cp2k.org/_media/wiki:logo.png</url>
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    <item rdf:about="https://www.cp2k.org/tools:aiida?rev=1598004913&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>aiida</title>
        <link>https://www.cp2k.org/tools:aiida?rev=1598004913&amp;do=diff</link>
        <description>AiiDA Workflow and Provenance Engine



AiiDA is a flexible and scalable informatics&#039; infrastructure to manage, preserve, and disseminate the simulations, data, and workflows of modern-day computational science. Able to store the full provenance of each object, and based on a tailored database built for efficient data mining of heterogeneous results, AiiDA gives the user the ability to interact seamlessly with any number of remote HPC resources and codes, thanks to its flexible plugin interface …</description>
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    <item rdf:about="https://www.cp2k.org/tools:aml?rev=1657207329&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2022-07-07T15:22:09+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>aml</title>
        <link>https://www.cp2k.org/tools:aml?rev=1657207329&amp;do=diff</link>
        <description>AML Python Package

The AML is a Python package to automatically build the reference set for the training of Neural Network Potentials (FORCE_EVAL/NNP) in an automated and data-driven fashion. 

The code is freely available under the GNU GPL license at: &lt;https://github.com/MarsalekGroup/aml&gt;.

Appetizing Example</description>
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    <item rdf:about="https://www.cp2k.org/tools:ase?rev=1611056966&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2021-01-19T11:49:26+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>ase</title>
        <link>https://www.cp2k.org/tools:ase?rev=1611056966&amp;do=diff</link>
        <description>Atomic Simulation Environment

The Atomistic Simulation Environment (ASE) is a set of tools and Python modules for setting up, manipulating, running, visualizing, and analyzing atomistic simulations. The code is freely available under the GNU LGPL license.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:avogadro1?rev=1598004913&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>avogadro1</title>
        <link>https://www.cp2k.org/tools:avogadro1?rev=1598004913&amp;do=diff</link>
        <description>Input generator and output visualizer for Avogadro 1

Libavogadro1cp2k is a C++ library providing an interactive CP2K input generator and output visualizer for Avogadro version 1.

Avogadro version 1 is an advanced molecular editor and visualizer for closs-platform use.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:avogadro2?rev=1598004913&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>avogadro2</title>
        <link>https://www.cp2k.org/tools:avogadro2?rev=1598004913&amp;do=diff</link>
        <description>Input generator for Avogadro 2

 Avogadro 2 is a chemical
editor and visualization application, and also a set of reusable software
libraries written in C++.

Avogadro 2 already provides input generators for various quantum chemistry
software such as GAMESS and
NWChem. Our goal is to provide support for
generating CP2K input files.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:basissetexchange?rev=1675285754&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2023-02-01T21:09:14+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>basissetexchange</title>
        <link>https://www.cp2k.org/tools:basissetexchange?rev=1675285754&amp;do=diff</link>
        <description>Basis Set Exchange



This project is a library containing basis sets for use in quantum chemistry calculations. In addition, this library has functionality for manipulation of basis set data.

The goal of this project is to create a consistent, thoroughly curated database of basis sets, and to provide a standard nomenclature for quantum chemistry.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:cp2k-basis?rev=1675285133&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2023-02-01T20:58:53+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>cp2k-basis</title>
        <link>https://www.cp2k.org/tools:cp2k-basis?rev=1675285133&amp;do=diff</link>
        <description>cp2k-basis: Browse Basis-sets and Pseudos



A library to parse CP2K basis sets and GTH pseudopotentials, which also comes with a webserver to find out and select a basis set and its matching pseudopotential for your CP2K calculations. More details here.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:cubecruncher?rev=1598004913&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>cubecruncher</title>
        <link>https://www.cp2k.org/tools:cubecruncher?rev=1598004913&amp;do=diff</link>
        <description>Cubecruncher

The cubecruncher is a tool to do various operations on cube files.
Its source code can be found at tools/cubecruncher within CP2K&#039;s tool-collection.

Before using it the tool has to be compiled:


$ git clone https://github.com/cp2k/cp2k.git
$ cd cp2k/tools/cubecruncher
$ make</description>
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        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>emacs</title>
        <link>https://www.cp2k.org/tools:emacs?rev=1598004913&amp;do=diff</link>
        <description>Plugin for the GNU EMACS editor

[emacs screen shot for cp2k input]

cp2k-mode.el provides a major mode in emacs for editing CP2K input
files. It has been tested on emacs 21, 23 and 24.

Functionalities

Recognises and font-locks

	*  the full CP2K input preprocessor syntax
	*  the sections and subsections</description>
    </item>
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        <dc:format>text/html</dc:format>
        <dc:date>2022-09-14T10:05:41+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>gromacs</title>
        <link>https://www.cp2k.org/tools:gromacs?rev=1663149941&amp;do=diff</link>
        <description>Gromacs QM/MM



	*   Installation guide
	*   Manual
	*   Tutorial
	*   Workshop with  recordings
	*    BioExcel Project

Example .mdp File


; CP2K QMMM parameters
qmmm-cp2k-active              = true
qmmm-cp2k-qmgroup             = QMatoms
qmmm-cp2k-qmmethod            = PBE
qmmm-cp2k-qmcharge            = 0
qmmm-cp2k-qmmultiplicity      = 1

; Other mdp parameters....</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:grrm?rev=1626353324&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2021-07-15T12:48:44+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>grrm</title>
        <link>https://www.cp2k.org/tools:grrm?rev=1626353324&amp;do=diff</link>
        <description>GRRM Global Reaction Route Mapping



GRRM is the first computer program based on the SHS(ADD) algorithm for an       
automated exploration of chemical reaction pathways by utilizing energies       
obtained from solutions of HΨ＝EΨ.                                            
GRRM copes with long standing fundamental problems in chemistry by automated    
exploration of chemical reaction pathways.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:ipi?rev=1598004913&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>ipi</title>
        <link>https://www.cp2k.org/tools:ipi?rev=1598004913&amp;do=diff</link>
        <description>i-PI - a universal force engine



i-PI is a universal force engine interface written in Python, designed to be used together with an ab-initio (or force-field based) evaluation of the interactions between the atoms. The main goal is to decouple the problem of evolving the ionic positions to sample the appropriate thermodynamic ensemble and the problem of computing the inter-atomic forces.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:libra?rev=1664637132&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2022-10-01T15:12:12+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>libra</title>
        <link>https://www.cp2k.org/tools:libra?rev=1664637132&amp;do=diff</link>
        <description>Libra: Quantum-Classical Non-Adiabatic Dynamics

	*   Main Website 
	*   Github Repository
	*   Documentation 
	*   Tutorials</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:nomad?rev=1598004913&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>nomad</title>
        <link>https://www.cp2k.org/tools:nomad?rev=1598004913&amp;do=diff</link>
        <description>the NOMAD Repository

The NOMAD Repository ( &lt;https://repository.nomad-coe.eu&gt; ) offers uploading, downloading, sharing, assigning DOIs, and more. Storing is guaranteed for at least 10 years. Nomad supports CP2k and its users.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:phonopy?rev=1695672637&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2023-09-25T20:10:37+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>phonopy</title>
        <link>https://www.cp2k.org/tools:phonopy?rev=1695672637&amp;do=diff</link>
        <description>Phonopy



Phonopy is an open source package for phonon calculations at harmonic and quasi-harmonic levels.

For more information see &lt;https://phonopy.github.io/phonopy/cp2k.html&gt;.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:pwtools?rev=1598004913&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>pwtools</title>
        <link>https://www.cp2k.org/tools:pwtools?rev=1598004913&amp;do=diff</link>
        <description>Pwtools for pre- and postprocessing

The pwtools package, written by Steve Schmerler, is a Python package for pre- and postprocessing of atomistic calculations, mostly targeted to Quantum Espresso, CPMD, CP2K and LAMMPS. It has tools extending numpy/scipy and a set of powerful parsers and data types for storing calculation data in a code-agnositc manner, thereby enabling easy comparison and interchange of results from different codes.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:pycp2k?rev=1598004913&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>pycp2k</title>
        <link>https://www.cp2k.org/tools:pycp2k?rev=1598004913&amp;do=diff</link>
        <description>PYCP2K: a python interface to CP2K

PYCP2K is a python package providing a dynamic object-oriented interface to CP2K.

PYCP2K allows the user to create and run entire CP2K simulations with python scripts. The simulation parameters can be dynamically created and altered thanks to an object tree that replaces the traditional CP2K input scripts.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:pyretis?rev=1598004913&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>pyretis</title>
        <link>https://www.cp2k.org/tools:pyretis?rev=1598004913&amp;do=diff</link>
        <description>PyRETIS - rare events in Python



PyRETIS is a Python library for rare event molecular simulations with emphasis on methods based on transition interface sampling and replica exchange transition interface sampling. It&#039;s documentation includes  a full example using CP2K.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:seekpath?rev=1598004913&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>seekpath</title>
        <link>https://www.cp2k.org/tools:seekpath?rev=1598004913&amp;do=diff</link>
        <description>SeeK-path: the k-path finder and visualizer



A web-tool that that provides band paths compatible with space group symmetry, and an interactive 3D visualizer. 

As part of the output a CP2K BAND_STRUCTURE section is generated.

Goto: &lt;https://www.materialscloud.org/work/tools/seekpath&gt;</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:sublime?rev=1598004913&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>sublime</title>
        <link>https://www.cp2k.org/tools:sublime?rev=1598004913&amp;do=diff</link>
        <description>Plugin for the Sublime Text 3 editor

For more information see &lt;https://github.com/nholmber/cp2k-syntax&gt;.

Features

	*  Syntax highlighting based on the .sublime-syntax format requiring a recent version of Sublime Text 3 (minimum build number 3084)
	*  Standalone python linter which parses the input file and compares it to the XML input description of CP2K</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:tamkin?rev=1598004913&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>tamkin</title>
        <link>https://www.cp2k.org/tools:tamkin?rev=1598004913&amp;do=diff</link>
        <description>TAMkin: A Package for Vibrational Analysis and Chemical Kinetics

TAMkin is a post-processing toolkit for normal mode analysis, thermochemistry and reaction kinetics. It uses a Hessian computation from a standard computational chemistry program as its input.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:tetr?rev=1598004913&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2020-08-21T10:15:13+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>tetr</title>
        <link>https://www.cp2k.org/tools:tetr?rev=1598004913&amp;do=diff</link>
        <description>UCSF Chimera Plugins for TETR and LEV00

Tetr and Lev00 are pre and post-processing tools respectively for DFT codes including CP2K, written by Lev Kantorovich of King&#039;s College London.

TETR assists with setting up a system geometry, for example, building supercell, merging geometries from different file formats (e.g. adding a molecule to an existing surface), constructing surfaces, and building molecular clusters.</description>
    </item>
    <item rdf:about="https://www.cp2k.org/tools:vim?rev=1699630296&amp;do=diff">
        <dc:format>text/html</dc:format>
        <dc:date>2023-11-10T15:31:36+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>vim</title>
        <link>https://www.cp2k.org/tools:vim?rev=1699630296&amp;do=diff</link>
        <description>Plugin for the Vim editor

[  syntax highlighting and editing features for CP2K input files.]

Plugin setup

Syntax highlighting for CP2K input files can be enabled with the (g)vim editor using the vim plugin file  cp2k.vim.
Download the file cp2k.vim and copy it to the folder ~/.vim/syntax in your home directory, e.g. using</description>
    </item>
</rdf:RDF>
