# ddX-References  {#label_references}

The relevant literature for the ddX and the individual ddCOSMO, ddPCM and ddLPB methods is listed below. If you're using one of the methods through the ddX-library, please cite the corresponding paper(s).

<br />
#### ddX library
[1]  <a href="https://doi.org/10.1002/wcms.1726" target="_blank">M. Nottoli, M. F. Herbst, A. Mikhalev, A. Jha, F. Lipparini, B. Stamm,  ddX: Polarizable continuum solvation from small molecules to proteins, WIREs Computational Molecular Science, Vol. 14, No. 4, pp. e1726 (2024)</a>

<br />
#### ddCOSMO: 

[2] <a href="https://doi.org/10.1063/1.4816767" target="_blank">E. Cancès, Y. Maday, B. Stamm, Domain decomposition for implicit solvation models, Journal of Chemical Physics, Vol. 139, No. 5, pp. 054111 (2013)</a>

[3] <a href="https://doi.org/10.1021/ct400280b" target="_blank">F. Lipparini, B. Stamm, E. Cancès, Y. Maday, B. Mennucci, A Fast Domain Decomposition Algorithm for Continuum Solvation Models: Energy and First Derivatives, J. Chem. Theory Comput., Vol. 9, No. 8, pp. 3637–3648 (2013)</a>

[4] <a href="https://doi.org/10.1021/jz5002506" target="_blank">F. Lipparini, L. Lagardère, G. Scalmani, B. Stamm, E. Cancès, Y. Maday, J.-P. Piquemal, M. J. Frisch, B. Mennucci, Quantum calculations in solution for large to very large molecules: a new linear scaling QM/continuum approach, J. Phys. Chem. Lett., Vol. 5, No. 4, pp. 953-958 (2014)</a>

[5] <a href="https://doi.org/10.1063/1.4901304" target="_blank">F. Lipparini, G. Scalmani, L. Lagardère, B. Stamm, E. Cancès, Y. Maday, J.-P. Piquemal, M. Frisch and B. Mennucci, Quantum, Classical and Hybrid QM/MM Calculations in Solution: General Implementation of the ddCOSMO Linear Scaling Strategy, Journal of Chemical Physics., Vol. 141, pp. 184108 (2014)</a>

[6] <a href="https://doi.org/10.1021/ct501087m" target="_blank">S. Caprasecca, S. Jurinovich, L. Lagardère, B. Stamm, F. Lipparini, Achieving linear scaling in computational cost for a fully polarizable MM/Continuum embedding, J. Chem. Theory Comput., Vol. 11, No. 2, pp. 694-704 (2015)</a>

[7] <a href="https://doi.org/10.1021/ct500998q" target="_blank">F. Lipparini, L. Lagardère, Ch. Raynaud, B. Stamm, E. Cancès, B. Mennucci, M. Schnieders, P. Ren,Y. Maday, J.-P. Piquemal, Polarizable Molecular Dynamics in a Polarizable Continuum Solvent, J. Chem. Theory Comput., Vol. 11, No. 2, pp. 623-634 (2015)</a>

[8] <a href="https://doi.org/10.1002/qua.25669" target="_blank">B. Stamm, L. Lagardère, G. Scalmani, P. Gatto, E. Cances, J. Piquemal, Y. Maday, B. Mennucci, F. Lipparini, How to make continuum solvation incredibly fast in a few simple steps: a practical guide to the domain decomposition paradigm for the Conductor-like Screening Model, Int. J. Quantum Chem. (2019)</a>

[9] <a href="https://doi.org/10.1021/acs.jpcb.2c04579" target="_blank">M. Nottoli, A. Mikhalev, B. Stamm, F. Lipparini, Coarse-Graining ddCOSMO through an Interface between Tinker and the ddX Library, J. Phys. Chem. B, Vol. 157, (2022)</a>

[10] <a href="https://doi.org/10.1021/acs.jctc.1c00555" target="_blank">M. Nottoli, R. Nifosì, B. Mennucci, F. Lipparini, Energy, Structures, and Response Properties with a Fully Coupled QM/AMOEBA/ddCOSMO Implementation, J. Chem. Theory Comput., Vol. 17, No. 9, pp. 5661--5672 (2021)</a>

<br />
#### ddPCM: 
[11] <a href="https://doi.org/10.1063/1.4940136" target="_blank">B. Stamm, E. Cancès, F. Lipparini, Y. Maday, A new discretization for the Polarizable Continuum Model within the domain decomposition paradigm, J. Chem. Physics, Vol. 144, 054101 (2016)</a>

[12] <a href="https://doi.org/10.1063/1.5008329" target="_blank">P. Gatto, F. Lipparini, and B. Stamm, Computation of Forces arising from the Polarizable Continuum Model within the Domain-Decomposition Paradigm,  J. Chem. Physics, Vol. 147, 224108 (2017)</a>

[13] <a href="https://doi.org/10.1021/acs.jctc.9b00640" target="_blank">M. Nottoli, B. Stamm, G. Scalmani, F. Lipparini, Quantum calculations in solution of energies, structures and properties with a domain decomposition polarizable continuum model, J. Chem. Theory Comput., Vol. 15, No. 11, pp. 6061–6073 (2019)</a>

[14] <a href="https://doi.org/10.1063/5.0104536" target="_blank">A. Mikhalev, M. Nottoli, B. Stamm, Linearly scaling computation of ddPCM solvation energy and forces using the fast multipole method, J. Chem. Physics, Vol. 157, 114103 (2022)</a>

<br />
#### ddLPB: 
[15] <a href="https://doi.org/10.1137/18M119553X" target="_blank">Ch. Quan, B. Stamm, Y. Maday, A Domain Decomposition Method for the Poisson-Boltzmann Solvation Models, SIAM J. Sci. Comput., Vol. 41, No. 2, pp. B320-B350, (2019)</a>

[16] <a href="https://doi.org/10.1063/5.0141025" target="_blank">A. Jha, M. Nottoli, A. Mikhalev, Ch. Quan, B. Stamm, Linear scaling computation of forces for the domain-decomposition linear Poisson–Boltzmann method, J. Chem. Physics, Vol. 158, 104105 (2023)</a>

