User Tools

Site Tools


tools:ase

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Next revision
Previous revision
Next revisionBoth sides next revision
tools:ase [2015/05/22 12:02] – created oschuetttools:ase [2017/03/03 16:33] oschuett
Line 2: Line 2:
 The Atomistic Simulation Environment (ASE) is a set of tools and Python modules for setting up, manipulating, running, visualizing and analyzing atomistic simulations. The code is freely available under the GNU LGPL license. The Atomistic Simulation Environment (ASE) is a set of tools and Python modules for setting up, manipulating, running, visualizing and analyzing atomistic simulations. The code is freely available under the GNU LGPL license.
  
-The ASE comes with a plugin, a so-called calculator, for running simulations with CP2K. The source code of the calculator is in the file [[https://trac.fysik.dtu.dk/projects/ase/browser/trunk/ase/calculators/cp2k.py | ase/calculators/cp2k.py]]. Furthermore, there is a small test suite in [[ https://trac.fysik.dtu.dk/projects/ase/browser/trunk/ase/test/cp2k | ase/test/cp2k]]+The ASE comes with a plugin, a so-called calculator, for running simulations with CP2K. The source code of the calculator is in the file [[https://trac.fysik.dtu.dk/projects/ase/browser/trunk/ase/calculators/cp2k.py | ase/calculators/cp2k.py]]. It's documentation can be found [[https://wiki.fysik.dtu.dk/ase/ase/calculators/cp2k.html here ]].
  
-For more information visit the [[https://wiki.fysik.dtu.dk/ase/ASE project page]]+For more information about ASE in general visit their [[https://wiki.fysik.dtu.dk/ase/ | project page]]
  
 +=====Appetizing Example=====
 +The ASE provides a very convenient, high level interface to CP2K. It bring about the renown [[w>Python_(programming_language)|Pythonic]] productivity. Running a CP2K calculation can be as easy as this:
 +<code bash>
 +$ export ASE_CP2K_COMMAND="mpirun -n 2 cp2k_shell.popt"
 +$ python
 +>>> from ase.calculators.cp2k import CP2K
 +>>> from ase.build import molecule
 +>>> calc = CP2K()
 +>>> atoms = molecule('H2O', calculator=calc)
 +>>> atoms.center(vacuum=2.0)
 +>>> print(atoms.get_potential_energy())
 +-467.191035845
 +</code>
  
 +For more examples have a look at the test suite in [[ https://trac.fysik.dtu.dk/projects/ase/browser/trunk/ase/test/cp2k | ase/test/cp2k]].
  
 +<note warning>
 +The environment variable ''$ASE_CP2K_COMMAND'' must point to the **CP2K-shell** binary.
 +</note>
 +
 +=====Remote Usage over SSH=====
 +The ASE calculator communicate with the CP2K-shell solely over stdin/stdout pipes. Therefore, one can launch the CP2K-shell on a remote host via ssh. For this the environment variable ''$ASE_CP2K_COMMAND'' has to be setup accordingly:
 +<code bash>
 +export ASE_CP2K_COMMAND="ssh your-compute-host.com \"mpirun -np 2 /path/to/cp2k_shell.popt\""
 +</code>
tools/ase.txt · Last modified: 2021/01/19 11:49 by oschuett