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exercises:2020_uzh_acpc2:ex02 [2020/04/21 09:14] – created jglanexercises:2020_uzh_acpc2:ex02 [2020/08/21 10:15] (current) – external edit 127.0.0.1
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 We have prepared a CP2K input file ''water.inp'' for running a MD simulation of liquid water using the force field from the first exercise (parametrized by [[https://aip.scitation.org/doi/pdf/10.1063/1.1884609|Praprotnik et al.]]). We have prepared a CP2K input file ''water.inp'' for running a MD simulation of liquid water using the force field from the first exercise (parametrized by [[https://aip.scitation.org/doi/pdf/10.1063/1.1884609|Praprotnik et al.]]).
-<note important>Download {{ water.zip |water.zip}} and extract it.</note>  +<note important>Download {{ :exercises:2019_uzh_acpc2:water.zip |water.zip}} and extract it.</note> 
  
 <note>**TASK 1** <note>**TASK 1**
   * Check that the MD is energy conserving and //well-behaved//   * Check that the MD is energy conserving and //well-behaved//
-  * What are the final average temperatures in each of the simulations? Why are they different from the initial ones?+  * What are the final average temperatures of the simulation
   * The initial atomic configuration stems from an equilibration run. At which temperature was the system (approximately) equilibrated?   * The initial atomic configuration stems from an equilibration run. At which temperature was the system (approximately) equilibrated?
 </note> </note>
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 \begin{equation} \begin{equation}
-A(\omega)\propto{\int\langle{\mu}({\tau}){\mu}(t+{\tau})\rangle_{\tau}e^{-i{\omega}t}d{t}},+A(\omega)\propto{\int\langle{\dot{\mu}}({\tau}){\dot{\mu}}(t+{\tau})\rangle_{\tau}e^{-i{\omega}t}d{t}},
 \label{eq:auto} \label{eq:auto}
 \end{equation} \end{equation}
exercises/2020_uzh_acpc2/ex02.1587460445.txt.gz · Last modified: 2020/08/21 10:15 (external edit)