exercises:2020_uzh_acpc2:login
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| exercises:2020_uzh_acpc2:login [2020/04/07 08:03] – jglan | exercises:2020_uzh_acpc2:login [2020/08/21 10:15] (current) – external edit 127.0.0.1 | ||
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| * on Linux: it is enough to be logged-in in a graphical environment (Unity, Gnome, KDE, ...) | * on Linux: it is enough to be logged-in in a graphical environment (Unity, Gnome, KDE, ...) | ||
| * on Mac OS X/OSX/macOS Sierra: you need to install [[https:// | * on Mac OS X/OSX/macOS Sierra: you need to install [[https:// | ||
| - | * on Microsoft Windows: you need to install [[http:// | + | * on Microsoft Windows: you need to install [[https:// |
| * a file transfer tool to copy files from/to the server: | * a file transfer tool to copy files from/to the server: | ||
| * on Linux: put '' | * on Linux: put '' | ||
| Line 38: | Line 38: | ||
| * Connect to the server by entering the command: '' | * Connect to the server by entering the command: '' | ||
| - | ==== Login using Windows ==== | + | ==== Login using Windows |
| + | |||
| + | * Connect to Internet (use VPN when not in the UZH network) | ||
| + | * Start VcXsrv (optional, only required if you want to run graphical applications on the server) | ||
| + | * Start the Powershell console | ||
| + | * Type the command '' | ||
| + | * Enter (username and) password as requested | ||
| + | |||
| + | ==== Login using Windows with Putty ==== | ||
| First configure Putty (only required on the first run) as follows: | First configure Putty (only required on the first run) as follows: | ||
| Line 54: | Line 62: | ||
| * Connect to Internet (use VPN when not on the UZH network) | * Connect to Internet (use VPN when not on the UZH network) | ||
| - | * Start Xming (optional, only required if you want to run graphical applications on the server) | + | * Start VcXsrv |
| * Start Putty | * Start Putty | ||
| * Double click the session '' | * Double click the session '' | ||
| Line 68: | Line 76: | ||
| </ | </ | ||
| - | ===== Part II: Loading and running a program ===== | ||
| + | ===== Part II: Advanced account configuration ===== | ||
| - | We need for visualization is [[http:// | ||
| - | |||
| - | Load the respective module (since there is only one version available, the shorthand '' | ||
| - | |||
| - | < | ||
| - | $ vmd | ||
| - | </ | ||
| - | |||
| - | Two new windows named '' | ||
| - | |||
| - | < | ||
| - | Info) VMD for LINUXAMD64, version 1.9.2 (December 29, 2014) | ||
| - | Info) http:// | ||
| - | Info) Email questions and bug reports to vmd@ks.uiuc.edu | ||
| - | Info) Please include this reference in published work using VMD: | ||
| - | Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual | ||
| - | Info) Molecular Dynamics', | ||
| - | Info) ------------------------------------------------------------- | ||
| - | Info) Multithreading available, 32 CPUs detected. | ||
| - | Info) Free system memory: 256213MB (99%) | ||
| - | Warning) Detected a mismatch between CUDA runtime and GPU driver | ||
| - | Warning) Check to make sure that GPU drivers are up to date. | ||
| - | Info) No CUDA accelerator devices available. | ||
| - | Warning) Detected X11 ' | ||
| - | Warning) try disabling this X server option. | ||
| - | Warning) disable stereoscopic display when ' | ||
| - | libGL error: failed to load driver: swrast | ||
| - | libGL error: Try again with LIBGL_DEBUG=verbose for more details. | ||
| - | Info) OpenGL renderer: GeForce GTX 760 (192-bit)/ | ||
| - | Info) | ||
| - | Info) GLSL rendering mode is NOT available. | ||
| - | Info) | ||
| - | Info) Dynamically loaded 2 plugins in directory: | ||
| - | Info) / | ||
| - | vmd > | ||
| - | </ | ||
| - | |||
| - | If you only get the output on the server but not the 2 windows there is something wrong with your setup and you should check the lecture notes again. You can exit VMD by either closing the '' | ||
| - | |||
| - | < | ||
| - | vmd > quit | ||
| - | </ | ||
| - | |||
| - | <note tip>The module loading is **not** persistent. You have to reload the modules every time you log back in.</ | ||
| - | |||
| - | |||
| - | ===== Part III: Advanced account configuration ===== | ||
| - | |||
| - | ==== Make module loading persistent ==== | ||
| - | |||
| - | Upon login, the shell ('' | ||
| - | |||
| - | < | ||
| - | $ echo ' | ||
| - | </ | ||
| - | |||
| - | after that you can add and remove modules to be loaded at startup using '' | ||
| - | |||
| - | To add '' | ||
| - | |||
| - | < | ||
| - | $ module initadd cp2k/ | ||
| - | </ | ||
| - | |||
| - | to remove '' | ||
| - | |||
| - | < | ||
| - | $ module initrm cp2k | ||
| - | </ | ||
| - | |||
| - | Alternatively you can of course simply edit '' | ||
| ==== Setup key-based authentication ==== | ==== Setup key-based authentication ==== | ||
exercises/2020_uzh_acpc2/login.1586246598.txt.gz · Last modified: 2020/08/21 10:15 (external edit)