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How to run a GFN1-xTB calculation

This is a short tutorial on how to run GFN1-XTB computations. The details on the theory and the original implementation by Grimme can be found in https://pubs.acs.org/doi/full/10.1021/acs.jctc.7b00118. Please cite this paper if you were to use the GFN1-XTB module.

Brief theory recap

The semi-empirical GFN1-xTB energy expression comprises contributions due to electronic (EL), atom-pairwise repulsion (REP), dispersion (DISP), and halogen-bonding (XB) terms as well as optionally, a generic nonbonding potential correction (NONBOND),

EGFN1xTB=EEL+EREP+EDISP+EXB+ENONBOND.

1. The electronic energy contribution,

Eel=occiniΨi|h0|Ψi+12A,BlAlBpAlplBγAB,ll+13AΓAq3ATelSel,

contains zeroth-order contributions based on a zeroth-order Hamiltonian h0, the valence molecular orbitals Ψi, occupation numbers ni as well as second-order contributions which are optimized self-consistently as well as third-order diagonal contributions. The second order contributions are described using the semi-empirical electron repulsion operator γAB,ll which depends on the interatomic distance of atoms A and B as well as further empirical parameters that are specific for different angular momenta l and l. The monopole charges of the second-order expression are optimized self-consistently,

pAl=pA0lNAOνμA,μlSμνPμν,

referring to the atomic orbital overlap matrix S and the density matrix P.

The remaining diagonal terms represent a cubic charge correction based on the Mulliken charge qA of atom A and the charge derivative ΓA of the atomic Hubbard parameter ηA. Furthermore, the electronic temperature times entropy term TelSel enables fractional orbital occupations.

2. Repulsion is described via an atom-pairwise potential,

Erep=ABZeffAZeffBRABexp(αAαB)1/2(RAB)kf, with the effective nuclear charge Zeff as well as the global or element-specific parameters kf and α.

3. Dispersion is included by the well-established D3 method in the BJ-damping schemehttps://aip.scitation.org/doi/10.1063/1.3382344.

4. Corrections for element-specific interactions are possible using either a halogen-bonding correction term (XB) or a generic nonbonding potential correction (NONBOND). Note that the generic nonbonding potential correction is CP2K specific.

The GFN1-xTB input section

The most important keywords and subsections of section xTB are:

  • DO_EWALD: keyword to activate Ewald summation for periodic boundary conditions (PBC); has to be switched to true in case of PBC
  • USE_HALOGEN_INTERACTION: keyword to switch off contribution EXB to correct halogen interactions, default is to include this correction
  • CHECK_ATOMIC_CHARGES: the cubic charge diagonal contribution is checked to be numerically stable by switching the keyword to true.
  • DO_NONBONDED: add a generic correction potential to correct bond- or atomic-specific interactions

The additional keywords COULOMB_INTERACTION, COULOMB_LR and TB3_INTERACTION are for debugging purposes only and it is recommended to use the default options here.

Simple examples

GFN1-xTB ground-state energy for

Adding a generic correction potential

howto/gfn1xtb.1658226611.txt.gz · Last modified: 2022/07/19 10:30 by ahehn